Factsheet for HORVU4Hr1G023260.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G083130.2
HORVU1Hr1G093390.2
HORVU3Hr1G027650.2
HORVU3Hr1G054240.2
HORVU6Hr1G020800.1
HORVU7Hr1G018000.2
HORVU7Hr1G018100.2
HORVU7Hr1G018110.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	HORVU1Hr1G093390.2	AT2G42580.1	19000166
AT2G30520.1	HORVU3Hr1G027650.2	AT2G42580.1	19000166
AT2G30520.1	HORVU3Hr1G054240.2	AT2G42580.1	19000166
AT2G30520.1	HORVU1Hr1G083130.2	AT5G66280.1	21798944
AT2G30520.1	HORVU6Hr1G020800.1	AT5G66280.1	21798944
AT2G30520.1	HORVU7Hr1G018000.2	AT5G66280.1	21798944
AT2G30520.1	HORVU7Hr1G018100.2	AT5G66280.1	21798944
AT2G30520.1	HORVU7Hr1G018110.1	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G122300.1	Wheat	cytosol, plastid	86.9	95.27
TraesCS4D01G120400.1	Wheat	cytosol, plastid	86.74	95.1
TraesCS4A01G192900.1	Wheat	cytosol	84.34	93.95
Os12t0117400-01	Rice	plasma membrane	67.25	73.86
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	68.37	69.37
Zm00001d005051_P001	Maize	cytosol	62.62	67.94
OQU82741	Sorghum	plastid	63.42	65.95
Zm00001d023314_P001	Maize	cytosol	61.66	60.5
KXG22914	Sorghum	plastid	62.94	55.18
KRH30675	Soybean	cytosol	19.17	54.3
GSMUA_Achr11P...	Banana	cytosol, plastid	46.17	49.91
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	47.28	49.33
VIT_06s0004g08230.t01	Wine grape	mitochondrion	43.29	47.38
CDY10743	Canola	cytosol	43.13	46.47
CDY02075	Canola	cytosol	42.65	46.03
Bra018309.1-P	Field mustard	cytosol, plastid	43.29	45.85
CDX84827	Canola	cytosol	41.37	45.84
PGSC0003DMT400031245	Potato	cytosol	41.85	45.49
Solyc07g043130.2.1	Tomato	cytosol	41.85	45.49
KRG98106	Soybean	cytosol	41.53	45.38
Bra022805.1-P	Field mustard	cytosol	41.53	45.22
AT2G30520.1	Thale cress	cytosol	42.81	45.19
CDY23992	Canola	cytosol	40.73	45.13
KRH72843	Soybean	cytosol	41.69	45.0
KRH17211	Soybean	cytosol	41.21	44.56
KRH30676	Soybean	plastid	16.61	36.49
HORVU4Hr1G069480.3	Barley	cytosol	30.99	31.65
HORVU1Hr1G055870.1	Barley	plastid	28.91	27.22
HORVU5Hr1G046340.2	Barley	plastid	26.84	26.54
HORVU7Hr1G073650.1	Barley	cytosol	26.52	25.9
HORVU5Hr1G098170.1	Barley	cytosol, mitochondrion	28.27	25.84
HORVU5Hr1G093850.15	Barley	mitochondrion	26.52	25.3
HORVU5Hr1G093880.1	Barley	cytosol	16.77	25.24
HORVU5Hr1G093120.2	Barley	cytosol	24.6	24.29
HORVU3Hr1G076740.1	Barley	cytosol	24.76	24.11
HORVU6Hr1G053490.2	Barley	cytosol	23.96	23.92
HORVU4Hr1G069760.10	Barley	cytosol	22.84	23.37
HORVU7Hr1G030460.8	Barley	cytosol	24.44	23.18
HORVU5Hr1G018480.1	Barley	cytosol	22.68	22.54
HORVU5Hr1G064620.1	Barley	cytosol	22.84	22.45
HORVU0Hr1G011770.1	Barley	cytosol	16.29	22.42
HORVU6Hr1G015480.1	Barley	cytosol	26.04	22.3
HORVU5Hr1G010370.2	Barley	plastid	25.08	19.9
HORVU0Hr1G012710.2	Barley	cytosol, plastid	18.21	19.59
HORVU7Hr1G097110.6	Barley	cytosol	16.45	19.0
HORVU1Hr1G034650.1	Barley	plasma membrane, vacuole	18.37	17.72

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628
GO:GO:0009638	GO:GO:0009987	EnsemblPlantsGene:HORVU4Hr1G023260	EnsemblPlants:HORVU4Hr1G023260.3	InterPro:IPR000210	InterPro:IPR027356
UniProt:M0WA98	InterPro:NPH3_dom	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370
PANTHER:PTHR32370:SF17	InterPro:RPT2	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI0002966B12	SEG:seg

Description

No Description!

Coordinates

chrchr4H:-:124878102..124880890

Molecular Weight (calculated)

66612.5 Da

IEP (calculated)

8.898

GRAVY (calculated)

-0.127

Length

626 amino acids

Sequence
(BLAST)

001: MQKSSPPPSQ ENTWTRNSNG ISIYPVVIGM LPPGAELDLH ERTPSSSSRH VPLSALLSMQ ASSTRSSSME RTSQWVSSQD VPTDLVVRVA GATFPLHKAV
101: MVPKCGYIRK AIAMATRPGP ATTVEIELAG LPGGADAFEK AARYCYGANF EISARNAAAL LCAAAFLDMQ PADGGLARRV EEFLAQAGLR TLPNAIAVLR
201: SCEGPLLTAA EELGVARRAA DAVALRICNE VLFPTRSPPE WWASELAALS PASFHTVVTA LRYRRAGPEV LVAAATAYAE LLLADGKASD HGALLESVVA
301: VLPSEDDAPL PAAFLCRLLH DAVTTEASAK TCRDLELRLA AVLDQATAGD LLAFALDGAG KRVINTDSLR RVIAAFVERE SGAGRNRRAS LSGAAALGAG
401: ALQKVAKMVD EVAAEIATDE SLPISRFVGV AGAVPKDARD THDCLYRAVD IYLKAHPELD EIEREKVCSV MDTLKLSYTA RLHASQNKRL PLQAVLSALY
501: YDQLKLRSAA VSHDDEDNDA RSEAGSARMQ AKADAALARE NQALRSELAR MRAHMSSGVQ QSKGSGSRTA ATGKKASFFG SMSRTLSRLN PFRAGGGWSK
601: DTSSIRDSRG GAMNVVKPKR RRSSIS

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.