Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU7Hr1G018700.1 | |
| HORVU7Hr1G018750.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G64330.1 | HORVU7Hr1G018700.1 | AT4G25160.1 | 16777956 |
| AT5G64330.1 | HORVU7Hr1G018750.2 | AT4G25160.1 | 16777956 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G117400.1 | Wheat | cytosol | 95.62 | 94.72 |
| TraesCS6A01G085100.1 | Wheat | cytosol | 94.53 | 94.53 |
| TraesCSU01G114000.1 | Wheat | cytosol | 94.94 | 94.29 |
| Zm00001d016898_P001 | Maize | cytosol | 82.22 | 80.24 |
| Os02t0568200-00 | Rice | cytosol | 81.26 | 77.95 |
| EES07014 | Sorghum | nucleus | 81.81 | 77.36 |
| GSMUA_Achr3P20380_001 | Banana | cytosol | 59.92 | 76.17 |
| VIT_03s0038g00270.t01 | Wine grape | cytosol | 64.16 | 69.58 |
| KRH23618 | Soybean | cytosol | 47.74 | 68.97 |
| KRH10586 | Soybean | cytosol | 62.93 | 68.45 |
| KRH42114 | Soybean | cytosol | 62.93 | 68.45 |
| PGSC0003DMT400006173 | Potato | cytosol | 62.93 | 68.05 |
| Solyc10g047530.1.1 | Tomato | cytosol | 62.52 | 67.8 |
| KRH21782 | Soybean | cytosol | 62.79 | 67.8 |
| PGSC0003DMT400083737 | Potato | cytosol | 60.19 | 66.77 |
| Solyc01g105680.2.1 | Tomato | nucleus | 60.47 | 66.07 |
| CDX84515 | Canola | cytosol | 62.52 | 62.95 |
| Bra024285.1-P | Field mustard | cytosol | 62.38 | 62.9 |
| CDY18715 | Canola | cytosol | 61.42 | 62.02 |
| AT5G64330.1 | Thale cress | cytosol | 63.2 | 61.93 |
| CDX81221 | Canola | cytosol | 61.83 | 61.92 |
| KRH49804 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 62.93 | 61.58 |
| Bra037773.1-P | Field mustard | cytosol | 61.7 | 61.19 |
| HORVU7Hr1G073650.1 | Barley | cytosol | 32.69 | 37.29 |
| HORVU5Hr1G093120.2 | Barley | cytosol | 31.33 | 36.12 |
| HORVU5Hr1G018480.1 | Barley | cytosol | 30.37 | 35.24 |
| HORVU3Hr1G076740.1 | Barley | cytosol | 30.92 | 35.15 |
| HORVU4Hr1G069760.10 | Barley | cytosol | 29.14 | 34.8 |
| HORVU7Hr1G030460.8 | Barley | cytosol | 29.96 | 33.18 |
| HORVU4Hr1G069480.3 | Barley | cytosol | 27.63 | 32.95 |
| HORVU5Hr1G064620.1 | Barley | cytosol | 28.45 | 32.65 |
| HORVU5Hr1G046340.2 | Barley | plastid | 28.18 | 32.54 |
| HORVU6Hr1G053490.2 | Barley | cytosol | 27.91 | 32.54 |
| HORVU1Hr1G055870.1 | Barley | plastid | 29.27 | 32.18 |
| HORVU5Hr1G093850.15 | Barley | mitochondrion | 28.59 | 31.86 |
| HORVU5Hr1G093880.1 | Barley | cytosol | 17.78 | 31.25 |
| HORVU5Hr1G010370.2 | Barley | plastid | 32.42 | 30.04 |
| HORVU7Hr1G097110.6 | Barley | cytosol | 22.02 | 29.7 |
| HORVU5Hr1G098170.1 | Barley | cytosol, mitochondrion | 27.36 | 29.2 |
| HORVU0Hr1G011770.1 | Barley | cytosol | 17.92 | 28.79 |
| HORVU0Hr1G012710.2 | Barley | cytosol, plastid | 22.85 | 28.69 |
| HORVU1Hr1G034650.1 | Barley | plasma membrane, vacuole | 24.76 | 27.89 |
| HORVU4Hr1G023260.3 | Barley | cytosol, plastid | 22.3 | 26.04 |
Protein Annotations
| MapMan:19.2.2.8.2.2.1 | UniProt:A0A287TEE2 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 |
| GO:GO:0009638 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016567 | GO:GO:0019538 | EnsemblPlantsGene:HORVU6Hr1G015480 |
| EnsemblPlants:HORVU6Hr1G015480.1 | InterPro:IPR027356 | InterPro:NPH3-like | InterPro:NPH3_dom | PFAM:PF03000 | PFscan:PS51649 |
| PANTHER:PTHR32370 | PANTHER:PTHR32370:SF6 | InterPro:SKP1/BTB/POZ_sf | SUPFAM:SSF54695 | UniParc:UPI000B46041F | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:-:34141233..34145217
Molecular Weight (calculated)
78372.0 Da
IEP (calculated)
7.363
GRAVY (calculated)
-0.266
Length
731 amino acids
Sequence
(BLAST)
(BLAST)
001: MWESESDAGE RGLVPVLGGG SGRHDDGLKN DGFVRRDQSW YVNSDIPSDL LVKVGDVSFH LHKYPMISRS GKMGRVIYEC ASAAVDQDAA VAELDELPGG
101: ADSFELAARF CYGMAVDLTA SNISGLRCAA EYLEMTEDLE EGNLIFKTEA FLSYVVLSSW RDSIVVLKSC EGLSPWAENL QIVRRCSESI AWKACANPRG
201: VRWAYTGATG GRPPRSGAGT ASPRWNNVGG GGGGSKESSP GRQPVPPADW WFEDVSVLRI DHFVRVVTAI KVKGMRFDLI GAAITHYASK WLPGLTKDAP
301: HAVGGGVDEQ WAQVSAAGGL HMIIAGPGGK DDVATSAPAR EQRMVVESLI SIIPPQRDSV SCGFLLRLLR LAIMLKAAPA LVTELEKRVG MQLEQAALPD
401: LLIPSVGRAD TAYDVDLVQR LVEHFLVQEQ TEQVSYSPGR GEAHAQPERE YYGSAAGARM PPASAAAAAS SSSASLGLNA KARVARLLDS YLSEVSRDRN
501: LSLTKFQVLA ESLPESARTC DDGLYRAVDS YLKAHPALTE HERKRLCRVM DCQKLSFDAC MHAAQNERLP LRVVVQVLFS EQVKISNALA GSSAAIKAAP
601: DGGAAPTRRQ LLDATPQSFQ EGWAAAKKDI NTLKFELESM KAKYLELQHD MDALQKQVTQ SPGGGEPGGK VGGGGGKAQQ GPSAWSNGWK KLGRLAKMTG
701: AEAAGPGGHG HAAAQSEAAR KAQRRWRNSI S
101: ADSFELAARF CYGMAVDLTA SNISGLRCAA EYLEMTEDLE EGNLIFKTEA FLSYVVLSSW RDSIVVLKSC EGLSPWAENL QIVRRCSESI AWKACANPRG
201: VRWAYTGATG GRPPRSGAGT ASPRWNNVGG GGGGSKESSP GRQPVPPADW WFEDVSVLRI DHFVRVVTAI KVKGMRFDLI GAAITHYASK WLPGLTKDAP
301: HAVGGGVDEQ WAQVSAAGGL HMIIAGPGGK DDVATSAPAR EQRMVVESLI SIIPPQRDSV SCGFLLRLLR LAIMLKAAPA LVTELEKRVG MQLEQAALPD
401: LLIPSVGRAD TAYDVDLVQR LVEHFLVQEQ TEQVSYSPGR GEAHAQPERE YYGSAAGARM PPASAAAAAS SSSASLGLNA KARVARLLDS YLSEVSRDRN
501: LSLTKFQVLA ESLPESARTC DDGLYRAVDS YLKAHPALTE HERKRLCRVM DCQKLSFDAC MHAAQNERLP LRVVVQVLFS EQVKISNALA GSSAAIKAAP
601: DGGAAPTRRQ LLDATPQSFQ EGWAAAKKDI NTLKFELESM KAKYLELQHD MDALQKQVTQ SPGGGEPGGK VGGGGGKAQQ GPSAWSNGWK KLGRLAKMTG
701: AEAAGPGGHG HAAAQSEAAR KAQRRWRNSI S
001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS
Arabidopsis Description
RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.