Factsheet for Zm00001d016898_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d045397_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	Zm00001d045397_P001	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07014	Sorghum	nucleus	90.39	87.58
HORVU6Hr1G015480.1	Barley	cytosol	80.24	82.22
TraesCSU01G114000.1	Wheat	cytosol	79.71	81.11
TraesCS6B01G117400.1	Wheat	cytosol	79.84	81.03
TraesCS6A01G085100.1	Wheat	cytosol	78.64	80.57
Os02t0568200-00	Rice	cytosol	80.64	79.27
GSMUA_Achr3P20380_001	Banana	cytosol	58.34	76.0
VIT_03s0038g00270.t01	Wine grape	cytosol	62.62	69.58
KRH23618	Soybean	cytosol	46.19	68.38
KRH42114	Soybean	cytosol	61.28	68.3
KRH10586	Soybean	cytosol	61.15	68.15
PGSC0003DMT400006173	Potato	cytosol	61.15	67.75
Solyc10g047530.1.1	Tomato	cytosol	60.75	67.51
KRH21782	Soybean	cytosol	61.01	67.5
PGSC0003DMT400083737	Potato	cytosol	59.28	67.37
Solyc01g105680.2.1	Tomato	nucleus	59.95	67.12
Bra024285.1-P	Field mustard	cytosol	60.61	62.62
CDX84515	Canola	cytosol	60.61	62.53
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	61.42	61.58
CDY18715	Canola	cytosol	59.41	61.46
Zm00001d004440_P001	Maize	cytosol	52.34	61.44
AT5G64330.1	Thale cress	cytosol	61.15	61.39
CDX81221	Canola	cytosol	59.81	61.37
Bra037773.1-P	Field mustard	cytosol	59.55	60.52
Zm00001d033240_P002	Maize	cytosol, mitochondrion, nucleus	32.18	38.31
Zm00001d035208_P002	Maize	cytosol	32.71	36.95
Zm00001d002146_P001	Maize	cytosol	30.17	36.45
Zm00001d048138_P007	Maize	cytosol	30.31	36.38
Zm00001d005769_P001	Maize	cytosol	29.51	35.36
Zm00001d045098_P001	Maize	cytosol	30.04	35.32
Zm00001d033344_P001	Maize	cytosol	29.91	35.28
Zm00001d043271_P001	Maize	cytosol	29.51	34.16
Zm00001d013741_P001	Maize	cytosol	29.11	33.9
Zm00001d030864_P001	Maize	cytosol	28.97	33.85
Zm00001d033941_P001	Maize	mitochondrion, plastid	28.44	33.76
Zm00001d020512_P001	Maize	cytosol	29.24	33.74
Zm00001d028056_P001	Maize	cytosol	26.84	33.67
Zm00001d023313_P001	Maize	plastid	28.7	32.67
Zm00001d019944_P001	Maize	cytosol	24.97	32.19
Zm00001d047483_P002	Maize	plastid	27.64	31.99
Zm00001d050959_P001	Maize	cytosol, mitochondrion, plastid	26.17	31.26
Zm00001d017079_P001	Maize	cytosol	26.03	31.25
Zm00001d003297_P001	Maize	mitochondrion	25.63	31.17
Zm00001d013182_P003	Maize	cytosol, mitochondrion	27.1	28.88
Zm00001d005051_P001	Maize	cytosol	21.9	28.42
Zm00001d028075_P010	Maize	endoplasmic reticulum	29.11	27.01
Zm00001d023314_P001	Maize	cytosol	20.96	24.61

Protein Annotations

MapMan:19.2.2.8.2.2.1	Gene3D:3.30.710.10	UniProt:A0A1D6HB21	ProteinID:AQK71901.1	InterPro:BTB/POZ_dom	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	InterPro:IPR000210	InterPro:IPR027356	InterPro:NPH3-like
InterPro:NPH3_dom	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF6
InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI0008443058	EnsemblPlantsGene:Zm00001d016898	EnsemblPlants:Zm00001d016898_P001	EnsemblPlants:Zm00001d016898_T001
SEG:seg	:	:	:	:	:

Description

Transposon protein Mutator sub-class

Coordinates

chr5:-:179623715..179628079

Molecular Weight (calculated)

80020.3 Da

IEP (calculated)

7.549

GRAVY (calculated)

-0.232

Length

749 amino acids

Sequence
(BLAST)

001: MWESEGDCHA GERERGLVPV GGGGSSGRYE AALKNDGFVR RDQSWYVNSD IPSDLLVKVG DVSFHLHKYP MISRSGRMSR VIYETAAAAP DSGAAAAVVV
101: ELDDVPGGAD SFELAARFCY GMAVDLTAGN ISGLRCAAEY LEMTEELEEG NLIFKTEAFL SYVVLSSWRD SIVVLKTCEG LSPWAENLQI VRRCSESIAW
201: KACANPRGVR WAYTGGGGGR PMPTTRAGAG GGTASPRWNL GGGGGDSKES SPSRQAVPPP DWWFEDVSML RIDHFVRVVT AIKVKGMRFD LIGASITHYA
301: SKWLPGLTKD GPHGGALEEP WAQAQASPGG GLHMIIASGG GGGGGKDDIA GSTPAREQRM VVESLISIIP LQRDSVSCGF LLRLLRLAVM LKAAPALVTE
401: LEKRVGMQLE QAVLADLLIP SYGRADTAYD VDLVQRLVEH FLVQEQTELL ASSSPGRVEQ PPLPEYYGAR TAGAAAASAS AGLNAKARVA RLLDSYLSEV
501: SRDRNLSLTK FQVLAESLPE SARTCDDGLY RAVDSYLKAS QAHPTLTEHE RKRLCRVMDC QKLSLDACMH AAQNERLPLR VVVQVLFSEQ VKISNALASG
601: SSSNAAAAAL LANKAADGVA PPTRRQLLDG TPQSFQEGWA AAKKDINTLK LELESMKAKY LELQHEMDAL QKLVERGAPS PLAAGLKATG GGVGSKNHSQ
701: GPSAWSSGWK KLGRLAKMTG GDAAGHDGHV PGAPGEAPRK PRRWRNSIS

Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)

001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS

Arabidopsis Description

RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.