CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99090
KRH45905
KRH56330
KRH62634
KRH70717
KRH74851

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	KRG99090	AT2G02950.1	16777956
AT5G64330.1	KRH45905	AT2G02950.1	16777956
AT5G64330.1	KRH70717	AT2G02950.1	16777956
AT5G64330.1	KRH74851	AT2G02950.1	16777956
AT5G64330.1	KRH56330	AT4G25160.1	16777956
AT5G64330.1	KRH62634	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21782	Soybean	cytosol	97.47	96.75
KRH23618	Soybean	cytosol	72.02	95.65
KRH42114	Soybean	cytosol	83.33	83.33
VIT_03s0038g00270.t01	Wine grape	cytosol	80.51	80.27
Solyc10g047530.1.1	Tomato	cytosol	79.32	79.08
PGSC0003DMT400006173	Potato	cytosol	79.17	78.7
PGSC0003DMT400083737	Potato	cytosol	76.04	77.54
Solyc01g105680.2.1	Tomato	nucleus	76.49	76.83
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	84.23	75.77
GSMUA_Achr3P20380_001	Banana	cytosol	63.1	73.74
CDX84515	Canola	cytosol	74.55	69.01
Bra024285.1-P	Field mustard	cytosol	74.4	68.97
CDX81221	Canola	cytosol	73.81	67.95
CDY18715	Canola	cytosol	72.92	67.68
AT5G64330.1	Thale cress	cytosol	75.0	67.56
Bra037773.1-P	Field mustard	cytosol	73.51	67.03
HORVU6Hr1G015480.1	Barley	cytosol	68.45	62.93
TraesCS6B01G117400.1	Wheat	cytosol	69.05	62.87
TraesCS6A01G085100.1	Wheat	cytosol	68.3	62.79
TraesCSU01G114000.1	Wheat	cytosol	68.6	62.64
Zm00001d016898_P001	Maize	cytosol	68.15	61.15
EES07014	Sorghum	nucleus	68.6	59.64
Os02t0568200-00	Rice	cytosol	67.56	59.58
Zm00001d004440_P001	Maize	cytosol	52.53	55.33
GSMUA_Achr1P21440_001	Banana	cytosol	47.47	52.47
KXG25806	Sorghum	cytosol	49.85	51.22
KRH43181	Soybean	cytosol	43.01	46.17
KRH59336	Soybean	cytosol	42.26	45.08
KRH58085	Soybean	cytosol	36.16	38.94
KRH04439	Soybean	cytosol	36.16	38.63
KRH12771	Soybean	cytosol	36.9	38.57
KRH37734	Soybean	cytosol	36.61	38.26
KRH58082	Soybean	cytosol	35.71	38.22
KRH04442	Soybean	cytosol	35.57	37.94
KRH19874	Soybean	cytosol	33.04	37.69
KRH32482	Soybean	cytosol	32.89	37.52
KRH35678	Soybean	cytosol	34.67	37.34
KRH33962	Soybean	cytosol	31.25	37.17
KRH77099	Soybean	cytosol	34.08	37.05
KRH21111	Soybean	cytosol	33.63	36.99
KRH04469	Soybean	cytosol	31.7	36.54
KRH58066	Soybean	cytosol	31.99	36.44
KRG92834	Soybean	cytosol	30.51	36.28
KRH05372	Soybean	cytosol	33.04	36.04
KRG91101	Soybean	mitochondrion	33.78	36.03
KRH74516	Soybean	cytosol	32.89	35.94
KRH34860	Soybean	cytosol	33.04	35.92
KRH28386	Soybean	cytosol	33.63	35.87
KRG99441	Soybean	cytosol	33.63	35.76
KRG91918	Soybean	cytosol	32.74	35.66
KRH45579	Soybean	nucleus	33.63	35.65
KRH15648	Soybean	cytosol	32.59	35.61
KRH66064	Soybean	extracellular	32.29	35.4
KRH69640	Soybean	cytosol	33.33	35.22
KRH00498	Soybean	cytosol, plastid	31.55	34.87
KRH28552	Soybean	cytosol	30.51	34.63
KRH40661	Soybean	plastid	31.1	34.38
KRH52322	Soybean	cytosol	30.95	34.04
KRH01932	Soybean	cytosol	29.61	34.02
KRH08351	Soybean	cytosol	32.74	33.95
KRH26561	Soybean	cytosol	31.85	33.7
KRH51214	Soybean	cytosol	29.32	33.28
KRH22745	Soybean	cytosol	31.1	33.02
KRH11633	Soybean	cytosol	29.61	33.0
KRH36642	Soybean	cytosol	29.32	32.89
KRH61660	Soybean	cytosol	30.8	32.81
KRH17211	Soybean	cytosol	28.12	32.64
KRH72843	Soybean	cytosol	28.12	32.59
KRG98106	Soybean	cytosol	27.68	32.46
KRH31912	Soybean	cytosol	30.21	32.32
KRH68133	Soybean	cytosol, plastid	30.21	32.27
KRH71541	Soybean	plastid	30.21	32.22
KRH69999	Soybean	endoplasmic reticulum	32.59	32.21
KRG99570	Soybean	cytosol, endoplasmic reticulum, nucleus	32.14	32.05
KRG96392	Soybean	plastid	29.91	32.01
KRH76914	Soybean	cytosol	24.11	31.76
KRH30676	Soybean	plastid	13.39	31.58
KRH30675	Soybean	cytosol	10.12	30.77
KRH62777	Soybean	cytosol	13.99	29.84
KRG90163	Soybean	cytosol	19.94	27.92

Protein Annotations

EntrezGene:100815459	MapMan:19.2.2.8.2.2.1	Gene3D:3.30.710.10	EMBL:ACUP02009148	InterPro:BTB/POZ_dom	ncoils:Coil
EnsemblPlantsGene:GLYMA_15G056500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	UniProt:I1MDZ4	InterPro:IPR000210
InterPro:IPR027356	EnsemblPlants:KRH10586	ProteinID:KRH10586	ProteinID:KRH10586.1	InterPro:NPH3-like	InterPro:NPH3_dom
PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF6	InterPro:SKP1/BTB/POZ_sf
SUPFAM:SSF54695	UniParc:UPI000233B42B	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:4397004..4400972

Molecular Weight (calculated)

75318.9 Da

IEP (calculated)

7.409

GRAVY (calculated)

-0.341

Length

672 amino acids

Sequence
(BLAST)

001: MWESESESAS AHKYGGGLLT SSNHGVKTEG FVQRGHSWYV ATDIPSDFLV QIGEANFHLH KYPLVSRSGK LSRVIYESHD PDLNKIVIDD IPGGAEAFEL
101: AAKFCYGIAV DLTAGNISGL RCAAEYLEMT EDLEEGNLIF KAEAFLSYVV LSSWRDSIVV LKSCEKLSPW AENLQIVRRC SESIAWKACA NPKGIRWSYT
201: GRTAKISSPK WNDMKDSSPS RNQQVPPDWW FEDASILRID HFVRVITAIK VKGMRFELVG ASIMHYATKW LPGLISDTAI PGDEASNCSM SNSSSSGGSS
301: WKGGLHMVVT GTKDDTSSLQ AKEQRMIIES LVSIIPPQKD SVSCSFLLRL LRMAIMLKVA PALVTELEKR VGMQFEQATL ADLLIPSYNK GETMYDVDLV
401: QRLLEHFIIQ EHTESSSPSR QSFSDKQHMG MGCILNAKAR VARLVDSYLT EVSRDRNLSL TKFQVLAEAL PESARTCDDG LYRAIDSYLK AHPTLSEHER
501: KRLCRVMDCQ KLSIDACLHA AQNERLPLRV VVQVLFAEQV KISNALASSS VKDVESESHA MVTNRKTLLE GTPQSFQEGW TAAKKDINTL KFELESVKAK
601: YMELQNDMAS LQKQFDKMLK QKHTSAWSSG WKKLSKLGRT THLVENQDDS PEIQDSLEQN RKTTRRWRNS IS

Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)

001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS

Arabidopsis Description

RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.