CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10586
KRH11936
KRH21782
KRH23618
KRH36969
KRH42114
KRH49804
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02950.1	KRH52586	AT1G22920.1	21798944
AT2G02950.1	KRH61926	AT1G22920.1	21798944
AT2G02950.1	KRH11936	AT2G18790.1	10348744
AT2G02950.1	KRH36969	AT2G18790.1	10348744
AT2G02950.1	KRH10586	AT5G64330.1	16777956
AT2G02950.1	KRH21782	AT5G64330.1	16777956
AT2G02950.1	KRH23618	AT5G64330.1	16777956
AT2G02950.1	KRH42114	AT5G64330.1	16777956
AT2G02950.1	KRH49804	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70717	Soybean	nucleus	74.85	74.85
KRG99090	Soybean	cytosol, nucleus, peroxisome	42.19	41.27
KRH45905	Soybean	nucleus	40.57	37.52
VIT_01s0026g02330.t01	Wine grape	nucleus	39.35	37.16
Bra024800.1-P	Field mustard	nucleus, plastid	20.69	32.08
CDY03026	Canola	plastid	25.15	31.63
CDY17423	Canola	plastid	25.96	30.48
AT2G02950.1	Thale cress	plastid	26.98	30.3
Bra017406.1-P	Field mustard	plastid	25.36	29.83
CDY39328	Canola	nucleus	24.95	29.5
CDX84038	Canola	cytosol	22.52	29.44
CDY60835	Canola	plastid	24.95	29.29
Bra019666.1-P	Field mustard	plastid	25.76	29.2
AT1G14280.1	Thale cress	plastid	26.17	29.19
CDY45189	Canola	plastid	24.34	29.06
CDY49100	Canola	plastid	25.56	28.97
CDY62179	Canola	plastid	23.53	28.09
CDY09346	Canola	plastid	23.12	27.47
Bra026572.1-P	Field mustard	plastid	23.12	27.47
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	20.49	24.4
CDX83749	Canola	cytosol	11.16	24.02
GSMUA_Achr10P...	Banana	nucleus	16.43	23.14

Protein Annotations

EMBL:ACUP02000080	EnsemblPlants:KRH74851	EnsemblPlantsGene:GLYMA_01G046600	EntrezGene:100811572	PANTHER:PTHR33781	PANTHER:PTHR33781:SF4
ProteinID:KRH74850.1	ProteinID:KRH74851	ProteinID:KRH74851.1	SEG:seg	UniParc:UPI0002337303	UniProt:K7K1T8
MapMan:26.1.2.2.3	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:5379316..5382027

Molecular Weight (calculated)

54373.4 Da

IEP (calculated)

9.287

GRAVY (calculated)

-0.681

Length

493 amino acids

Sequence
(BLAST)

001: MVILAATSNN KIHQLQTFNS QNNNYHLRDA SFSSYLNNKK EILAESGHGY VSSRKEPLGV KKEDDGEIGV FEAEKYFNGE EMESPPRIAD NDANKHLPQK
101: DEQTVLVTRK YKVQYGTPSV RSESSLNSQS ALLQSAVRNS SRNMKSKLQR KSFLAGLGCK CYCSDKNSVD ISDHTGEISF SKNATHGKTT SRNMFNAEPE
201: ANHSFKMTKP NAAEISINKD VYFQRPEKLG VGLSKENSLA LSAVNSISGN HLLKMQLQQV EKSRNSLEVF GSPILSIRNK SLSFDKRLAK TSSWDDAPKI
301: EETDFSAKSG GNYNDADSDA SSDLFEIESL TGKSNTFLGR STSNVVSSCA SPTTCYAPSE VSIEWSVATA SALEYSAMSD YDDQRSIATT RSPIRTSIVS
401: SNAKPKVIKE MQRRRPSMLL GCKSQKAVGV AVNAFTTYEK TSSNTNSRCR SDTFPQVTET KEGSFGARHK QHAYATTPLQ RSLSPHPSQL LYI

Best Arabidopsis Sequence Match ( AT1G14280.1 )
(BLAST)

001: MVTLTSSSST PNVSFDFMMN NNNNSNNLYG PFSSSSTSFS YLTSKEDALT QKNLMSGITN DVLGINKKAS EDLEISVFGA EKYFNGDMDS DHSPRLVSPL
101: PDPEVPIERI FVGPKQSSKN SSETPSLRSE SSWNSQSLLL QSKYVEKKKN IKKNSSCNSY FQEKDMSSNH KVSNKKSFLA TLGCRCVCSN WSSVDVVDDK
201: RRSSGLKKIK TQLSFSGDLS SEMKIHQQQQ EAMLEQRKSL EIFGSPLIEK RIIQKKFPWE YSSSAKKEEH GFSVKYEEEE DGSVSDVSTD LFEIESLTGK
301: ANPFLARQGS SDPDSPDGYA PSEVSIQWSV VTASVADFSV MSECATSPVK KNRSFQIPRI PIMAKSNREI APQRRKSSSS GLLMGCKSHK SVRVSGDSYT
401: SMNRTPSYVP RFPVEANPTS TETRRRISSS SVSHTQSPFL YT

Arabidopsis Description

PKS2Protein PHYTOCHROME KINASE SUBSTRATE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9T4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.