CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39328	Canola	nucleus	65.52	59.23
CDY49100	Canola	plastid	66.05	57.24
AT1G14280.1	Thale cress	plastid	66.31	56.56
CDX83749	Canola	cytosol	26.53	43.67
CDY45189	Canola	plastid	40.05	36.56
CDY03026	Canola	plastid	36.87	35.46
CDY17423	Canola	plastid	38.99	35.0
CDY60835	Canola	plastid	38.2	34.29
CDY09346	Canola	plastid	37.67	34.22
CDY62179	Canola	plastid	36.87	33.66
CDY19245	Canola	nucleus	14.06	33.12
CDX96697	Canola	cytoskeleton, cytosol, nucleus	22.28	23.27
VIT_01s0026g02330.t01	Wine grape	nucleus	31.83	22.99
KRH70717	Soybean	nucleus	29.97	22.92
CDX83812	Canola	cytoskeleton, cytosol, nucleus	21.75	22.65
KRH74851	Soybean	nucleus, plastid	29.44	22.52
KRG99090	Soybean	cytosol, nucleus, peroxisome	29.44	22.02
KRH45905	Soybean	nucleus	29.71	21.01
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	22.55	20.53
GSMUA_Achr10P...	Banana	nucleus	18.83	20.29
CDY19246	Canola	nucleus	5.57	18.92
CDY26723	Canola	nucleus	1.86	8.24

Protein Annotations

EnsemblPlants:CDX84038	EnsemblPlantsGene:GSBRNA2T00139859001	PANTHER:PTHR33781	PANTHER:PTHR33781:SF4	ProteinID:CDX84038	ProteinID:CDX84038.1
SEG:seg	UniParc:UPI0004EF4087	MapMan:26.1.2.2.3	:	:	:

Description

BnaC08g16070D

Coordinates

chrLK031834:-:1874557..1875690

Molecular Weight (calculated)

42021.3 Da

IEP (calculated)

9.382

GRAVY (calculated)

-0.711

Length

377 amino acids

Sequence
(BLAST)

001: MINLFIFSSN LNIRTQSKIS KPEHKIPAEK YFNGDMVTDH SPRLMCPLPN QEASIDRIFV GQKKNSKNSS ETPSLRSESS WNSQSLLLQN KSENKMKNHN
101: NSSVCNSHLQ SQEKNISSNH KSNNKKSFLA NLGCRCVCSN WSSVDVVEEK TRTSGLKKIK TQLSLSSEMK LHQQQQEAIL EQRKSLEIFG SPLIEKRIIS
201: KHLPWDHSIS AKTEEDGSAS DLSSDLFEIE SLTGNAKPFL ARQESSEPES PDCYAPSEVS IAWSVVTESV ADYSVVSECA TSPVDNRSFQ ATRIPKIAKS
301: NQETGSQRRK PSSGGLLLGC KSHKSVRVSG DSYTSLNRTP SYVPRFPLEA NPSSIETRRK VSSSSVSRTQ PPFMYIQ

Best Arabidopsis Sequence Match ( AT1G14280.1 )
(BLAST)

001: MVTLTSSSST PNVSFDFMMN NNNNSNNLYG PFSSSSTSFS YLTSKEDALT QKNLMSGITN DVLGINKKAS EDLEISVFGA EKYFNGDMDS DHSPRLVSPL
101: PDPEVPIERI FVGPKQSSKN SSETPSLRSE SSWNSQSLLL QSKYVEKKKN IKKNSSCNSY FQEKDMSSNH KVSNKKSFLA TLGCRCVCSN WSSVDVVDDK
201: RRSSGLKKIK TQLSFSGDLS SEMKIHQQQQ EAMLEQRKSL EIFGSPLIEK RIIQKKFPWE YSSSAKKEEH GFSVKYEEEE DGSVSDVSTD LFEIESLTGK
301: ANPFLARQGS SDPDSPDGYA PSEVSIQWSV VTASVADFSV MSECATSPVK KNRSFQIPRI PIMAKSNREI APQRRKSSSS GLLMGCKSHK SVRVSGDSYT
401: SMNRTPSYVP RFPVEANPTS TETRRRISSS SVSHTQSPFL YT

Arabidopsis Description

PKS2Protein PHYTOCHROME KINASE SUBSTRATE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9T4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.