CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016540.1-P	Field mustard	cytoskeleton, cytosol, nucleus	93.92	94.18
CDX96697	Canola	cytoskeleton, cytosol, nucleus	92.54	92.8
CDY19245	Canola	nucleus	36.46	82.5
AT1G18810.1	Thale cress	nucleus	78.18	73.13
CDY19246	Canola	nucleus	21.82	71.17
VIT_17s0000g06040.t01	Wine grape	cytosol	32.04	28.22
CDY26723	Canola	nucleus	6.35	27.06
CDY03026	Canola	plastid	25.97	23.98
PGSC0003DMT400083182	Potato	cytosol	30.39	23.81
Solyc03g116160.1.1	Tomato	cytosol	29.01	23.39
Solyc06g069880.1.1	Tomato	nucleus	30.11	23.19
CDY39328	Canola	nucleus	25.14	21.82
CDX84038	Canola	cytosol	22.65	21.75
CDY49100	Canola	plastid	25.97	21.61
CDY62179	Canola	plastid	24.59	21.55
GSMUA_Achr10P...	Banana	nucleus	20.72	21.43
CDY45189	Canola	plastid	24.31	21.31
CDY09346	Canola	plastid	24.31	21.2
CDY17423	Canola	plastid	23.76	20.48
CDY60835	Canola	plastid	22.93	19.76
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	20.99	18.36
CDX83749	Canola	cytosol	11.33	17.9

Protein Annotations

EnsemblPlants:CDX83812	EnsemblPlantsGene:GSBRNA2T00139565001	PANTHER:PTHR33781	PANTHER:PTHR33781:SF3	ProteinID:CDX83812	ProteinID:CDX83812.1
SEG:seg	UniParc:UPI0004EC7ACA	MapMan:26.1.2.2.3	:	:	:

Description

BnaC08g18330D

Coordinates

chrLK031834:+:585823..587247

Molecular Weight (calculated)

40288.3 Da

IEP (calculated)

9.784

GRAVY (calculated)

-0.702

Length

362 amino acids

Sequence
(BLAST)

001: MDAEKKGAHF HQISTHKPQL LVLSSIQEQP SSKISDKPTV KASVADVDSE IGVFGAEKYF SMKLDHVDST VDITKQHEKE NKEYHPHTHT HTQLTKTTSS
101: RSRTSRHGTP SVRSESSYNS QTFLMRMNNN NDNKQRKTND VSVSFGGFRC NGPCSGVKTI NTDRKIAGKG RNYDRDFVAY DARKHMDKAR PMISIPIQRS
201: DIAMNLERKL SILTWDAIPN HLSTKNINHN SSVSSKTQEE ETASEASSDL FEIENITSSV YEPSEVSIGW SVVTGSIADQ SVISDFDIMK RGTRSGSVVK
301: TKPVIAGKVR SGGFLSGCKS YKAVSVVDSA RNVKEAAKVD HHEMSQHKKL KTEIRIQDLS FL

Best Arabidopsis Sequence Match ( AT1G18810.1 )
(BLAST)

001: MDAEKKSAHF RQISSYKPQL LVLSSIQENP SSKISEKANI KADNDAEIGV FGAEKYFSMK LDHVDSTADI TKQHEKENTH DHPNANPNPN PNPHPHPHPQ
101: LTKTTSSRSK TSRHGTPSVR SESSCNSQTF LMRINNHNEN KQRKMNDTSI SFGGFRCYGP CSGVKTVHTD PKNSCKSRNS DRDFVAYDAR KHNDKPRLHF
201: EAKKADFHAQ EKISLPIQRS DIAMNLERKL SLLTWDAIPN QLSTKNNNHN NNGNNSSMSS NTQEEETASV ASSDLFEIEN ITSSVYEPSE ASIGWSVVTG
301: SMADQSVISD FDMMKRVTRN GPVVKTKPVI GEKVRSAGFL SGCKSHKAVS VVDSSRKVKE TAKVDHHEMS HQKKFKTEIR IQDLSFL

Arabidopsis Description

PKS3Protein PHYTOCHROME KINASE SUBSTRATE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.