Factsheet for GSMUA_Achr10P25760_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P21440_001
GSMUA_Achr3P08340_001
GSMUA_Achr3P20380_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02950.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT2G02950.1	GSMUA_Achr3P08340_001	AT2G18790.1	10348744
AT2G02950.1	GSMUA_Achr1P21440_001	AT5G64330.1	16777956
AT2G02950.1	GSMUA_Achr3P20380_001	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	39.43	33.33
CDY19245	Canola	nucleus	13.14	28.75
Bra024800.1-P	Field mustard	nucleus, plastid	21.71	23.9
Bra016540.1-P	Field mustard	cytoskeleton, cytosol, nucleus	22.29	21.61
VIT_17s0000g06040.t01	Wine grape	cytosol	25.14	21.41
CDX96697	Canola	cytoskeleton, cytosol, nucleus	21.43	20.78
CDX83812	Canola	cytoskeleton, cytosol, nucleus	21.43	20.72
AT2G02950.1	Thale cress	plastid	24.29	19.36
CDY03026	Canola	plastid	21.43	19.13
AT1G18810.1	Thale cress	nucleus	21.14	19.12
CDX84038	Canola	cytosol	20.29	18.83
PGSC0003DMT400080302	Potato	cytosol	24.86	18.71
Solyc05g007480.1.1	Tomato	cytosol	24.0	18.54
CDY45189	Canola	plastid	21.43	18.16
CDY39328	Canola	nucleus	21.43	17.99
AT1G14280.1	Thale cress	plastid	22.29	17.65
Solyc06g069880.1.1	Tomato	nucleus	23.43	17.45
CDY62179	Canola	plastid	20.57	17.43
CDY17423	Canola	plastid	20.86	17.38
PGSC0003DMT400083182	Potato	cytosol	22.86	17.32
CDY49100	Canola	plastid	21.43	17.24
Bra019666.1-P	Field mustard	plastid	21.43	17.24
CDX83749	Canola	cytosol	11.14	17.03
Solyc03g116160.1.1	Tomato	cytosol	21.71	16.93
Bra026572.1-P	Field mustard	plastid	20.0	16.87
Bra017406.1-P	Field mustard	plastid	20.0	16.71
KRH74851	Soybean	nucleus, plastid	23.14	16.43
CDY09346	Canola	plastid	19.43	16.39
KRG99090	Soybean	cytosol, nucleus, peroxisome	23.43	16.27
CDY60835	Canola	plastid	19.14	15.95
VIT_01s0026g02330.t01	Wine grape	nucleus	23.43	15.71
KRH70717	Soybean	nucleus	21.71	15.42
KRH45905	Soybean	nucleus	23.43	15.38
CDY19246	Canola	nucleus	4.86	15.32
CDY26723	Canola	nucleus	3.43	14.12

Protein Annotations

EnsemblPlants:GSMUA_Achr10P25760_001	EnsemblPlants:GSMUA_Achr10T25760_001	EnsemblPlantsGene:GSMUA_Achr10G25760_001	PANTHER:PTHR33781	SEG:seg	UniParc:UPI0002967C88
UniProt:M0RLF0	MapMan:26.1.2.2.3	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G25760_001]

Coordinates

chr10:-:29622257..29623781

Molecular Weight (calculated)

37649.8 Da

IEP (calculated)

10.376

GRAVY (calculated)

-0.675

Length

350 amino acids

Sequence
(BLAST)

001: MDQSHPSQSL HKGTVSQCFR HTPNTSSPTS TSNPSSPMDA TFSIKPTKKE VRVRVRSRST TGSISSEMTC NSRNTLLRDR RKHPVPGGQR KVKGKRFLGV
101: FPCSCARKDA IDIDKDGLSH ARSDGLRKQL PQAGERRDEH LVSDSRLKSI SPGLRQQVFA SREDRKGGGG PRVVFAPDFF THRRSLKIAS GGEGGRDDDV
201: QSDASSDLFE IESLSMTSSH PFITHEGTES VTTTAYEPSE ASVEWSVVTR SVANFSIASE RVAPAASLRK TRKSSGSGLL LGCVSEKAVD VTSGAKKPTG
301: STSFDHWERS GIDGAARFRA ESCGVDVGSG STGRVLPPSP FGSSRSSHDL

Best Arabidopsis Sequence Match ( AT2G02950.1 )
(BLAST)

001: MVTLTPSSAS TPKTSFDFMK NNNSHSSLYV SSSSYLSSKE DALVTTKKLM EPSKTLNMSI NPKQEEFGDE KKMVKKAPED PEIGVFGAEK YFNGDMDSDQ
101: GSSVLSLTNP EVERTVVDSK QSAKKSTGTP SVRSESSWNS QSVLLQNKLV NSCNSSFKEK KNSNGQIQKV TNNKKSFLAN LGCKCACSDG DSVDVEEKTS
201: VKRSADPNIS VITMRSSADM NTELIKIQKQ EELSQRKSLE VFGSPVAIEK KSSVVQKKLP LPPWKSRTEE DDTKSEGSDS SSDLFEIEGL TGNPKPFLTR
301: QGSDPASPTC YAPSEVSVEW SIVTASAADF SVMSECATSP VRRNRPTQIP RIPITAKSAP QRRKSSSSSG GNGFLMSCKS HKSVMVSGDL DRRSSMNKTQ
401: PSYVPRFPME TTKPKSFETR RRISNSSISH TQSSLLYSQ

Arabidopsis Description

PKS1Protein PHYTOCHROME KINASE SUBSTRATE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.