CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83812	Canola	cytoskeleton, cytosol, nucleus	92.8	92.54
CDY19245	Canola	nucleus	37.12	83.75
AT1G18810.1	Thale cress	nucleus	77.01	71.83
CDY19246	Canola	nucleus	21.88	71.17
VIT_17s0000g06040.t01	Wine grape	cytosol	32.41	28.47
CDY26723	Canola	nucleus	6.65	28.24
CDY03026	Canola	plastid	26.32	24.23
PGSC0003DMT400083182	Potato	cytosol	30.75	24.03
Solyc06g069880.1.1	Tomato	nucleus	30.47	23.4
Solyc03g116160.1.1	Tomato	cytosol	29.09	23.39
CDX84038	Canola	cytosol	23.27	22.28
CDY39328	Canola	nucleus	24.93	21.58
CDY62179	Canola	plastid	24.65	21.55
CDY45189	Canola	plastid	24.65	21.55
GSMUA_Achr10P...	Banana	nucleus	20.78	21.43
CDY49100	Canola	plastid	25.76	21.38
CDY09346	Canola	plastid	24.38	21.2
CDY17423	Canola	plastid	24.1	20.71
CDY60835	Canola	plastid	22.71	19.52
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	21.61	18.84
CDX83749	Canola	cytosol	11.08	17.47

Protein Annotations

EnsemblPlants:CDX96697	EnsemblPlantsGene:GSBRNA2T00102911001	PANTHER:PTHR33781	PANTHER:PTHR33781:SF3	ProteinID:CDX96697	ProteinID:CDX96697.1
SEG:seg	UniParc:UPI0004EDCEF9	MapMan:26.1.2.2.3	:	:	:

Description

BnaA08g22400D

Coordinates

chrLK031895:+:624662..626080

Molecular Weight (calculated)

40390.5 Da

IEP (calculated)

9.678

GRAVY (calculated)

-0.764

Length

361 amino acids

Sequence
(BLAST)

001: MDAEKKSAHF HQISTHKPQL LVLSSIQEKL SSKTSDKPTI KASVADVDSE IGVFGAEKYF SMKLDHVDST VDITKQHEKE NKEYHPHPHT HLTKTTSSRS
101: RTSRHGTPSV RSESSYNSQT FLMRMNNNND NKQRKTNDVS VSFGGFRCNG PCSGVKTINT DRNISSKGRN YDRDFVAYDA RKHMDKARPM IPIPIQRSDI
201: AMNLERKLSM LTWDAIPNRK NNIHNNGNNS SMSCKTQEEE TASEASSDLF EIENITSSVY EPSEVSIGWS VVTGSMADQS VISDFDIMKR GTRSGSVVKT
301: KPVIAEKVRS GGFLSGCKSY KAVSVVDSAK NVKEAAKVDH HEMSQHKKLK TEIRIQDLSF L

Best Arabidopsis Sequence Match ( AT1G18810.1 )
(BLAST)

001: MDAEKKSAHF RQISSYKPQL LVLSSIQENP SSKISEKANI KADNDAEIGV FGAEKYFSMK LDHVDSTADI TKQHEKENTH DHPNANPNPN PNPHPHPHPQ
101: LTKTTSSRSK TSRHGTPSVR SESSCNSQTF LMRINNHNEN KQRKMNDTSI SFGGFRCYGP CSGVKTVHTD PKNSCKSRNS DRDFVAYDAR KHNDKPRLHF
201: EAKKADFHAQ EKISLPIQRS DIAMNLERKL SLLTWDAIPN QLSTKNNNHN NNGNNSSMSS NTQEEETASV ASSDLFEIEN ITSSVYEPSE ASIGWSVVTG
301: SMADQSVISD FDMMKRVTRN GPVVKTKPVI GEKVRSAGFL SGCKSHKAVS VVDSSRKVKE TAKVDHHEMS HQKKFKTEIR IQDLSFL

Arabidopsis Description

PKS3Protein PHYTOCHROME KINASE SUBSTRATE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.