Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19246 | Canola | nucleus | 23.53 | 18.02 |
| CDX96697 | Canola | cytoskeleton, cytosol, nucleus | 28.24 | 6.65 |
| CDX83812 | Canola | cytoskeleton, cytosol, nucleus | 27.06 | 6.35 |
| VIT_17s0000g06040.t01 | Wine grape | cytosol | 23.53 | 4.87 |
| CDY19245 | Canola | nucleus | 8.24 | 4.38 |
| GSMUA_Achr10P... | Banana | nucleus | 14.12 | 3.43 |
| PGSC0003DMT400083182 | Potato | cytosol | 15.29 | 2.81 |
| Solyc06g069880.1.1 | Tomato | nucleus | 15.29 | 2.77 |
| CDY03026 | Canola | plastid | 11.76 | 2.55 |
| CDY45189 | Canola | plastid | 11.76 | 2.42 |
| GSMUA_Achr7P11570_001 | Banana | cytosol, plastid | 11.76 | 2.42 |
| CDY17423 | Canola | plastid | 11.76 | 2.38 |
| Solyc03g116160.1.1 | Tomato | cytosol | 10.59 | 2.0 |
| CDY39328 | Canola | nucleus | 9.41 | 1.92 |
| CDY60835 | Canola | plastid | 9.41 | 1.9 |
| CDX84038 | Canola | cytosol | 8.24 | 1.86 |
| CDY49100 | Canola | plastid | 9.41 | 1.84 |
| CDY62179 | Canola | plastid | 7.06 | 1.45 |
| CDY09346 | Canola | plastid | 7.06 | 1.45 |
| CDX83749 | Canola | cytosol | 2.35 | 0.87 |
Protein Annotations
| EnsemblPlants:CDY26723 | EnsemblPlantsGene:GSBRNA2T00035629001 | ProteinID:CDY26723 | ProteinID:CDY26723.1 | SEG:seg | UniParc:UPI0004EE4170 |
| UniProt:A0A078GPZ2 | MapMan:35.2 | : | : | : | : |
Description
BnaA06g12990DBnaA06g12990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPZ2]
Coordinates
chrLK032193:+:340057..341166
Molecular Weight (calculated)
9730.4 Da
IEP (calculated)
9.987
GRAVY (calculated)
-0.966
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MDAEKKSTHF RQISTYKPQL VLSSIQEHSS SKISNKPTIK STASDVDSES QTSEFSAQKT KVDHHEMSQK KKFKTEIRIQ DLSFL
001: MDAEKKSAHF RQISSYKPQL LVLSSIQENP SSKISEKANI KADNDAEIGV FGAEKYFSMK LDHVDSTADI TKQHEKENTH DHPNANPNPN PNPHPHPHPQ
101: LTKTTSSRSK TSRHGTPSVR SESSCNSQTF LMRINNHNEN KQRKMNDTSI SFGGFRCYGP CSGVKTVHTD PKNSCKSRNS DRDFVAYDAR KHNDKPRLHF
201: EAKKADFHAQ EKISLPIQRS DIAMNLERKL SLLTWDAIPN QLSTKNNNHN NNGNNSSMSS NTQEEETASV ASSDLFEIEN ITSSVYEPSE ASIGWSVVTG
301: SMADQSVISD FDMMKRVTRN GPVVKTKPVI GEKVRSAGFL SGCKSHKAVS VVDSSRKVKE TAKVDHHEMS HQKKFKTEIR IQDLSFL
101: LTKTTSSRSK TSRHGTPSVR SESSCNSQTF LMRINNHNEN KQRKMNDTSI SFGGFRCYGP CSGVKTVHTD PKNSCKSRNS DRDFVAYDAR KHNDKPRLHF
201: EAKKADFHAQ EKISLPIQRS DIAMNLERKL SLLTWDAIPN QLSTKNNNHN NNGNNSSMSS NTQEEETASV ASSDLFEIEN ITSSVYEPSE ASIGWSVVTG
301: SMADQSVISD FDMMKRVTRN GPVVKTKPVI GEKVRSAGFL SGCKSHKAVS VVDSSRKVKE TAKVDHHEMS HQKKFKTEIR IQDLSFL
Arabidopsis Description
PKS3Protein PHYTOCHROME KINASE SUBSTRATE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.