CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10586
KRH11936
KRH21782
KRH23618
KRH36969
KRH42114
KRH49804
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02950.1	KRH52586	AT1G22920.1	21798944
AT2G02950.1	KRH61926	AT1G22920.1	21798944
AT2G02950.1	KRH11936	AT2G18790.1	10348744
AT2G02950.1	KRH36969	AT2G18790.1	10348744
AT2G02950.1	KRH10586	AT5G64330.1	16777956
AT2G02950.1	KRH21782	AT5G64330.1	16777956
AT2G02950.1	KRH23618	AT5G64330.1	16777956
AT2G02950.1	KRH42114	AT5G64330.1	16777956
AT2G02950.1	KRH49804	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45905	Soybean	nucleus	71.83	67.92
KRH70717	Soybean	nucleus	42.46	43.41
KRH74851	Soybean	nucleus, plastid	41.27	42.19
VIT_01s0026g02330.t01	Wine grape	nucleus	35.52	34.29
CDY03026	Canola	plastid	24.01	30.87
Bra019666.1-P	Field mustard	plastid	25.99	30.11
CDY49100	Canola	plastid	25.99	30.11
CDY39328	Canola	nucleus	24.8	29.98
AT2G02950.1	Thale cress	plastid	25.79	29.61
CDX84038	Canola	cytosol	22.02	29.44
Bra024800.1-P	Field mustard	nucleus, plastid	18.45	29.25
AT1G14280.1	Thale cress	plastid	25.4	28.96
CDY45189	Canola	plastid	23.61	28.81
CDY17423	Canola	plastid	23.81	28.57
Bra017406.1-P	Field mustard	plastid	23.61	28.4
CDY60835	Canola	plastid	23.61	28.33
CDY62179	Canola	plastid	22.02	26.88
CDY09346	Canola	plastid	22.02	26.75
Bra026572.1-P	Field mustard	plastid	22.02	26.75
CDX83749	Canola	cytosol	11.11	24.45
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	19.44	23.67
GSMUA_Achr10P...	Banana	nucleus	16.27	23.43

Protein Annotations

EMBL:ACUP02010960	EnsemblPlants:KRG99090	EnsemblPlantsGene:GLYMA_18G120000	PANTHER:PTHR33781	PANTHER:PTHR33781:SF4	ProteinID:KRG99090
ProteinID:KRG99090.1	SEG:seg	UniParc:UPI0006ED7843	UniProt:A0A0R0F7I8	MapMan:26.1.2.2.3	:

Description

hypothetical protein

Coordinates

chr18:+:14929033..14930812

Molecular Weight (calculated)

55456.1 Da

IEP (calculated)

9.708

GRAVY (calculated)

-0.641

Length

504 amino acids

Sequence
(BLAST)

001: MVTTISSSTS RNFHHQLHTF NSENNINNNL FDATFSPYLN GNNEGTIIVG KLGEPSQKLK PFKSPLQKLE KKEENGEIGV FGAEKYFNVE VETPRSVNCI
101: TTPKYLHHRD EQMAIATRKN TLPYGTPSIR SESTTCNSQH ALLQSGMMMR NSSRSKKENK GHQAKSVLAG LGFKCSCSDK DSVDAGEISF SKPATYGSVH
201: GKTRRKLVDI AALDASHSIK ISKPNAELLK INNVYFQKQE STFGNSQKLL SFSPLSSASG NQNHLAKMQQ HQQLDEVEAE KPRNSIEVFG SPILKNKLKS
301: LSFDRTTTRL LEEIDSNYIN DAASDASSDL FEIESIKSKT NPFHARQTSD VAASSCVSPT NGYAPSEASI EWSVATASAA VMSDCEEQMS EVTIRSPIRT
401: TTFANGKAKS TKEVQRIRRP SMLLGCKSHK SVRVAGDAYI TYENPSSTPK LRNRTNSSSM VARFPSETKL GNFGAKHGHH HAYATPSPLQ NSHSSPHASK
501: LLYI

Best Arabidopsis Sequence Match ( AT2G02950.1 )
(BLAST)

001: MVTLTPSSAS TPKTSFDFMK NNNSHSSLYV SSSSYLSSKE DALVTTKKLM EPSKTLNMSI NPKQEEFGDE KKMVKKAPED PEIGVFGAEK YFNGDMDSDQ
101: GSSVLSLTNP EVERTVVDSK QSAKKSTGTP SVRSESSWNS QSVLLQNKLV NSCNSSFKEK KNSNGQIQKV TNNKKSFLAN LGCKCACSDG DSVDVEEKTS
201: VKRSADPNIS VITMRSSADM NTELIKIQKQ EELSQRKSLE VFGSPVAIEK KSSVVQKKLP LPPWKSRTEE DDTKSEGSDS SSDLFEIEGL TGNPKPFLTR
301: QGSDPASPTC YAPSEVSVEW SIVTASAADF SVMSECATSP VRRNRPTQIP RIPITAKSAP QRRKSSSSSG GNGFLMSCKS HKSVMVSGDL DRRSSMNKTQ
401: PSYVPRFPME TTKPKSFETR RRISNSSISH TQSSLLYSQ

Arabidopsis Description

PKS1Protein PHYTOCHROME KINASE SUBSTRATE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.