Factsheet for Bra024800.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 3
plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001650.1-P
Bra012351.1-P
Bra022192.1-P
Bra024285.1-P
Bra024548.1-P
Bra037773.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02950.1	Bra012351.1-P	AT1G22920.1	21798944
AT2G02950.1	Bra024548.1-P	AT1G22920.1	21798944
AT2G02950.1	Bra001650.1-P	AT2G18790.1	10348744
AT2G02950.1	Bra022192.1-P	AT2G18790.1	10348744
AT2G02950.1	Bra024285.1-P	AT5G64330.1	16777956
AT2G02950.1	Bra037773.1-P	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45189	Canola	plastid	88.05	67.8
CDY03026	Canola	plastid	76.42	61.99
AT2G02950.1	Thale cress	plastid	68.87	49.89
Bra017406.1-P	Field mustard	plastid	61.32	46.54
Bra026572.1-P	Field mustard	plastid	55.03	42.17
Bra019666.1-P	Field mustard	plastid	43.08	31.49
GSMUA_Achr10P...	Banana	nucleus	23.9	21.71
KRH70717	Soybean	nucleus	33.02	21.3
KRH74851	Soybean	nucleus, plastid	32.08	20.69
VIT_01s0026g02330.t01	Wine grape	nucleus	33.33	20.31
Bra016540.1-P	Field mustard	cytoskeleton, cytosol, nucleus	22.96	20.22
KRG99090	Soybean	cytosol, nucleus, peroxisome	29.25	18.45
KRH45905	Soybean	nucleus	29.56	17.64
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	20.44	15.7

Protein Annotations

EnsemblPlants:Bra024800.1	EnsemblPlants:Bra024800.1-P	EnsemblPlantsGene:Bra024800	PANTHER:PTHR33781	PANTHER:PTHR33781:SF4	SEG:seg
UniParc:UPI000253F870	UniProt:M4E7P4	MapMan:26.1.2.2.3	:	:	:

Description

AT2G02950 (E=7e-068) PKS1 | PKS1 (PHYTOCHROME KINASE SUBSTRATE 1); protein binding

Coordinates

chrA06:+:23494608..23495564

Molecular Weight (calculated)

35446.4 Da

IEP (calculated)

9.227

GRAVY (calculated)

-0.772

Length

318 amino acids

Sequence
(BLAST)

001: MDSDQSSSVL SLANTEVERF VVDSKQSEKR STGTPSVRSD SSWNSQSILL QNKLVNSCNS SLQEKKHNSD HIPKVNNSKK SFISNLRCKC VCTDENSVDV
101: DDKISVKIQK QEELVQRKAP EVFGSPLHIE KRVFVQKKLT LPPWESRIEE EDTKSDSSSD LFEIENLTGK PKPILGRQGS DPASPTCYAP SEVSIEWSIV
201: TASAADFSVM SECATSPVRR NRSSQIPQIP TNTYIDKNAP QRQKSSSSGK GGFLSCKSHK SVMVSSDSDR RSSMNKTSMS YVPRFPMETT KPKSFETRRR
301: VSNSSITHTP SSLLYSQY

Best Arabidopsis Sequence Match ( AT2G02950.1 )
(BLAST)

001: MVTLTPSSAS TPKTSFDFMK NNNSHSSLYV SSSSYLSSKE DALVTTKKLM EPSKTLNMSI NPKQEEFGDE KKMVKKAPED PEIGVFGAEK YFNGDMDSDQ
101: GSSVLSLTNP EVERTVVDSK QSAKKSTGTP SVRSESSWNS QSVLLQNKLV NSCNSSFKEK KNSNGQIQKV TNNKKSFLAN LGCKCACSDG DSVDVEEKTS
201: VKRSADPNIS VITMRSSADM NTELIKIQKQ EELSQRKSLE VFGSPVAIEK KSSVVQKKLP LPPWKSRTEE DDTKSEGSDS SSDLFEIEGL TGNPKPFLTR
301: QGSDPASPTC YAPSEVSVEW SIVTASAADF SVMSECATSP VRRNRPTQIP RIPITAKSAP QRRKSSSSSG GNGFLMSCKS HKSVMVSGDL DRRSSMNKTQ
401: PSYVPRFPME TTKPKSFETR RRISNSSISH TQSSLLYSQ

Arabidopsis Description

PKS1Protein PHYTOCHROME KINASE SUBSTRATE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.