Factsheet for Bra024285.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013868.1-P
Bra017406.1-P
Bra019185.1-P
Bra024800.1-P
Bra026572.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	Bra017406.1-P	AT2G02950.1	16777956
AT5G64330.1	Bra024800.1-P	AT2G02950.1	16777956
AT5G64330.1	Bra026572.1-P	AT2G02950.1	16777956
AT5G64330.1	Bra013868.1-P	AT4G25160.1	16777956
AT5G64330.1	Bra019185.1-P	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84515	Canola	cytosol	99.31	99.17
AT5G64330.1	Thale cress	cytosol	92.0	89.41
Bra037773.1-P	Field mustard	cytosol	89.93	88.47
VIT_03s0038g00270.t01	Wine grape	cytosol	73.1	78.64
PGSC0003DMT400083737	Potato	cytosol	70.76	77.85
Solyc01g105680.2.1	Tomato	nucleus	71.59	77.58
KRH42114	Soybean	cytosol	71.86	77.53
Solyc10g047530.1.1	Tomato	cytosol	72.0	77.45
GSMUA_Achr3P20380_001	Banana	cytosol	61.24	77.22
PGSC0003DMT400006173	Potato	cytosol	71.59	76.78
KRH23618	Soybean	cytosol	52.97	75.89
KRH10586	Soybean	cytosol	68.97	74.4
KRH21782	Soybean	cytosol	68.97	73.86
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	72.55	70.42
TraesCS6B01G117400.1	Wheat	cytosol	63.72	62.6
HORVU6Hr1G015480.1	Barley	cytosol	62.9	62.38
TraesCS6A01G085100.1	Wheat	cytosol	62.9	62.38
TraesCSU01G114000.1	Wheat	cytosol	63.31	62.36
Zm00001d016898_P001	Maize	cytosol	62.62	60.61
Os02t0568200-00	Rice	cytosol	63.31	60.24
EES07014	Sorghum	nucleus	63.59	59.64
Zm00001d004440_P001	Maize	cytosol	48.14	54.7
KXG25806	Sorghum	cytosol	47.03	52.14
GSMUA_Achr1P21440_001	Banana	cytosol	43.17	51.48
Bra032187.1-P	Field mustard	cytosol	26.62	40.29
Bra010771.1-P	Field mustard	cytosol, mitochondrion, nucleus	35.86	39.63
Bra032391.1-P	Field mustard	cytosol, mitochondrion, nucleus	35.31	38.73
Bra009047.1-P	Field mustard	cytosol	33.52	38.57
Bra037846.1-P	Field mustard	cytosol	27.86	38.4
Bra012166.1-P	Field mustard	cytosol	29.52	38.01
Bra005737.1-P	Field mustard	cytosol	30.62	37.76
Bra010603.1-P	Field mustard	cytosol	29.79	37.57
Bra008815.1-P	Field mustard	cytosol	30.76	36.74
Bra017837.1-P	Field mustard	cytosol	29.24	36.68
Bra004064.1-P	Field mustard	cytosol	31.17	35.93
Bra025440.1-P	Field mustard	cytosol	28.14	35.6
Bra012158.1-P	Field mustard	cytosol	29.24	35.27
Bra036858.1-P	Field mustard	cytosol	27.86	35.19
Bra011301.1-P	Field mustard	cytosol	27.86	35.01
Bra037460.1-P	Field mustard	cytosol	29.93	35.0
Bra018309.1-P	Field mustard	cytosol, plastid	28.28	34.69
Bra037606.1-P	Field mustard	cytosol	30.62	34.63
Bra022805.1-P	Field mustard	cytosol	27.45	34.61
Bra024915.1-P	Field mustard	cytosol	26.76	34.58
Bra039820.1-P	Field mustard	cytosol	29.79	34.45
Bra012082.1-P	Field mustard	cytosol	31.45	34.08
Bra001349.1-P	Field mustard	plastid	27.03	33.62
Bra033365.1-P	Field mustard	cytosol	29.1	33.49
Bra023423.1-P	Field mustard	cytosol	25.38	33.33
Bra031830.1-P	Field mustard	cytosol	25.38	33.33
Bra029894.1-P	Field mustard	plastid	29.66	33.28
Bra036043.1-P	Field mustard	cytosol	25.1	33.21
Bra025208.1-P	Field mustard	cytosol	26.07	32.93
Bra032564.1-P	Field mustard	cytosol, plastid	28.97	32.92
Bra032401.1-P	Field mustard	cytosol	27.45	32.78
Bra010770.1-P	Field mustard	plasma membrane	0.0	0.0

Protein Annotations

MapMan:19.2.2.8.2.2.1	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom	EnsemblPlantsGene:Bra024285	EnsemblPlants:Bra024285.1	EnsemblPlants:Bra024285.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	InterPro:IPR000210	InterPro:IPR027356
UniProt:M4E681	InterPro:NPH3-like	InterPro:NPH3_dom	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649
PANTHER:PTHR32370	PANTHER:PTHR32370:SF6	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI000253F3A8	SEG:seg

Description

AT5G64330 (E=0.0) NPH3, RPT3, JK218 | NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3); protein binding / signal transducer

Coordinates

chrA06:+:14739592..14743334

Molecular Weight (calculated)

80403.8 Da

IEP (calculated)

8.246

GRAVY (calculated)

-0.443

Length

725 amino acids

Sequence
(BLAST)

001: MWESESDSGV VGGGGREYGN GVLSSNKHAG VKTDGFELRG QSWFVATDIP SDLLVKIGDM NFHLHKYPLL SRSGKMNRLI YESRDPDPTI LLLDDLPGGP
101: EAFELASKFC YGVPVDLTAT NISGLRCAAE YLEMTEDLEE GNLIFKTEAF LSYVVLSSWR DSILVLKSCE KLSPWAENLQ IVRRCSESIA WKACSNPKGI
201: KWAYTGKSPS PSTANNFASS SPKWKDPKDS GFYSSPSRNN NNNNQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGASITHYAG KWLPGLIKEG
301: TPDEMSVSHG SNSSGGSSGP DWRGGLHMVL SGKPNGQHQQ DSAPYLAGHG ISPKDQRMIV ESLISIIPPQ KDSVTCTFLL RLLRAANMLK VAPALITELE
401: KRVGMQFEQA TLQDLLIPSY SNKGETVYDV DLVQRLLEHF LVQEQTEGSS PSRMSPYADA GIPRANSISG GGGNGGSNQN AKMRVARLVD SYLTEVARDR
501: NLPLTKFQVL AEALPESARS CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF SEQVKISNAL ANTSLKESTT
601: LGEAMGTTYQ PMIPNRKTLI EATPQSFQAR WAAAKKDINT LKFELETVKT KYVELQNEME VMQRQFEKTG KVKNTSSSAW TSGWKKLSKL TKMSGHETQD
701: MVGGEQVGVD HQPTRKPRRW RNSIS

Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)

001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS

Arabidopsis Description

RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.