Factsheet for Bra029894.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83030	Canola	plastid	82.2	99.25
AT2G47860.3	Thale cress	plastid	86.69	85.11
VIT_07s0104g01440.t01	Wine grape	plastid	65.63	67.19
Solyc09g074630.2.1	Tomato	cytosol	52.48	66.34
KRH71541	Soybean	plastid	64.4	66.03
PGSC0003DMT400029528	Potato	cytosol	52.01	66.01
KRH31912	Soybean	cytosol	63.78	65.61
KRG96392	Soybean	plastid	63.78	65.61
KRH68133	Soybean	cytosol, plastid	63.78	65.5
Bra033365.1-P	Field mustard	cytosol	60.68	62.22
GSMUA_Achr8P30170_001	Banana	plastid	53.25	61.65
GSMUA_Achr1P11260_001	Banana	plastid	54.02	60.91
Bra032564.1-P	Field mustard	cytosol, plastid	59.6	60.34
Zm00001d047483_P002	Maize	plastid	56.35	56.26
TraesCS5D01G463700.1	Wheat	plastid	56.19	55.59
OQU92601	Sorghum	plastid	56.81	55.52
HORVU1Hr1G055870.1	Barley	plastid	56.66	55.04
TraesCS7A01G184200.2	Wheat	plastid	56.81	54.94
Os03t0347700-01	Rice	mitochondrion, plastid	55.88	53.8
TraesCS5B01G461900.4	Wheat	plastid	53.87	52.97
Bra037460.1-P	Field mustard	cytosol	40.25	41.94
Bra012158.1-P	Field mustard	cytosol	38.7	41.6
Bra001349.1-P	Field mustard	plastid	37.31	41.34
Bra032401.1-P	Field mustard	cytosol	38.39	40.86
Bra031830.1-P	Field mustard	cytosol	33.28	38.95
Bra022805.1-P	Field mustard	cytosol	32.04	36.0
Bra018309.1-P	Field mustard	cytosol, plastid	32.82	35.87
Bra036043.1-P	Field mustard	cytosol	30.19	35.58
Bra005737.1-P	Field mustard	cytosol	30.65	33.67
Bra032187.1-P	Field mustard	cytosol	23.99	32.36
Bra008815.1-P	Field mustard	cytosol	29.72	31.63
Bra010771.1-P	Field mustard	cytosol, mitochondrion, nucleus	31.89	31.4
Bra036858.1-P	Field mustard	cytosol	27.86	31.36
Bra032391.1-P	Field mustard	cytosol, mitochondrion, nucleus	31.58	30.86
Bra012166.1-P	Field mustard	cytosol	26.78	30.73
Bra010603.1-P	Field mustard	cytosol	27.09	30.43
Bra037846.1-P	Field mustard	cytosol	24.61	30.23
Bra017837.1-P	Field mustard	cytosol	26.78	29.93
Bra023423.1-P	Field mustard	cytosol	25.54	29.89
Bra039820.1-P	Field mustard	cytosol	28.95	29.82
Bra025208.1-P	Field mustard	cytosol	26.47	29.79
Bra024285.1-P	Field mustard	cytosol	33.28	29.66
Bra037773.1-P	Field mustard	cytosol	33.75	29.58
Bra025440.1-P	Field mustard	cytosol	26.01	29.32
Bra004064.1-P	Field mustard	cytosol	28.48	29.25
Bra011301.1-P	Field mustard	cytosol	25.54	28.6
Bra037606.1-P	Field mustard	cytosol	28.33	28.55
Bra009047.1-P	Field mustard	cytosol	27.55	28.25
Bra012082.1-P	Field mustard	cytosol	28.95	27.95
Bra024915.1-P	Field mustard	cytosol	21.83	25.13
Bra010770.1-P	Field mustard	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	EnsemblPlantsGene:Bra029894	EnsemblPlants:Bra029894.1	EnsemblPlants:Bra029894.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0016020	InterPro:IPR000210	InterPro:IPR027356	UniProt:M4EM74	InterPro:NPH3_dom
PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF30
InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI0002543F42	SEG:seg	:	:

Description

AT2G47860 (E=2e-281) | phototropic-responsive NPH3 family protein

Coordinates

chrA01:-:14548796..14550980

Molecular Weight (calculated)

72320.1 Da

IEP (calculated)

8.918

GRAVY (calculated)

-0.276

Length

646 amino acids

Sequence
(BLAST)

001: MGVVTVPESK QSVSGKKAFR PSSSIRHTPQ WPVSDVTSDL TIEVGSASFS LHKFPLVSRS GRIRKLLLES KDTKNTYHLN LPGVPGGSEA FELAAKFCYG
101: VVLQFTSANI ASLRCVAHYL EMTEELSEKN LEVRTEAYLK DSILNDISNS ITVLHSIEKL LPVAEEISLV GRLVNAIAVN ACKEQLVSGL LKLDQKFERL
201: APETEKPSDW WGRSLLILKL DFFQRVVSAM KSKGLNHEII SDILMSYARK SLQIIREPSL VKGSVILDSD PQKKQRIVLE VIVGLLPTQA NKNSIPVSFL
301: STLLKTAIGS GTSVSCRSDL ERRISHQLDQ AILEDILIPA NVGGAMYDTD SVQRIFSMFL NLDECDYEDD DDGDVVDESE MAMYDFEGPE SPKQSSIFKV
401: SKLMDSYLAE VALDSNLPPL KFIALAELLP DHARVVCDCL YRAIDIFLKV HPNMKDSERY RLCKTISCQK LSQDASSHAA QNERLPIQIA VQVLFYEQTR
501: LKNTMTSGGG GSGACGSSQS QFFLFPGQFP NRSGSGMASG AISPRDNYAS VRRENRELRL EVARMRMRLT DLEKDHVSMK REFVKPSRRT RYGLFRKLSR
601: GLNKLNAIML RFRRSQSVAG NGKHTEEKTN SEKRFMFQKR RCHSVS

Best Arabidopsis Sequence Match ( AT2G47860.1 )
(BLAST)

001: MGVVTVPESN KQSVAAKRAF RPSSSIRHTP QWPVSDVTSD LTIEVGSATF SLHKFPLVSR SGRIRKLVLE SKDTNLNLAA VPGGSESFEL AAKFCYGVGV
101: QYNSSNIAAL RCVAHYLEMT EDLSEKNLEA RTEAYLKDSI FNDISNSITV LHSCERLLPV AEEINLVGRL VNAIAVNACK EQLASGLLKL DQSFSCGVPE
201: TAKPCDWWGR SLPILKLDFF QRVLSAMKSK GLNHDIISDI LMSYARKSLQ IIREPNLVKS DSDLQRKQRI VLEAVVGLLP TQANKSSIPI SFLSSLLKTA
301: IGSGTSVSCR SDLERRISHL LDQAILEDIL IPANIGAMYD TDSVQRIFSM FLNLDECEYR DDDDDEEDAV DESEMAMYDF EGAESPKQSS IFKVSKLMDS
401: YLAEVALDSS LPPSKFIALA ELLPDHARVV CDGLYRAVDI FLKVHPHMKD SERYRLCKTV SCKKLSQDAS SHAAQNERLP VQIAVQVLFY EQTRLKNAMT
501: SGGGTGGSNQ SQFFLFPNRS GSGMASGAIS PRDNYASVRR ENRELRLEVA RMRMRLTDLE KDHVSMKRDF VKPQSRRRRY GMLRKLSRGL NKLNAIVLRF
601: RSSQSVASSG KKHTEEKTNS ERRFMFQKRR CHSVS

Arabidopsis Description

Phototropic-responsive NPH3 family protein [Source:UniProtKB/TrEMBL;Acc:F4IM54]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.