Factsheet for Bra025208.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13635	Canola	cytosol	99.48	99.48
AT3G26490.3	Thale cress	cytosol	86.06	84.01
KRH74516	Soybean	cytosol	55.05	51.38
KRH69640	Soybean	cytosol	56.79	51.26
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	56.1	51.11
PGSC0003DMT400047866	Potato	cytosol	55.05	50.32
Bra004064.1-P	Field mustard	cytosol	54.88	50.08
Solyc05g013570.2.1	Tomato	nucleus	52.96	49.84
GSMUA_Achr10P...	Banana	cytosol	48.26	49.2
KRH45579	Soybean	nucleus	54.18	49.05
KRG99441	Soybean	cytosol	53.83	48.89
GSMUA_Achr8P16390_001	Banana	cytosol	40.59	44.64
TraesCS6D01G192300.1	Wheat	cytosol	43.03	39.39
TraesCS6B01G237800.1	Wheat	cytosol	42.68	39.14
TraesCS6A01G208800.2	Wheat	cytosol	42.68	39.08
Zm00001d003297_P001	Maize	mitochondrion	41.81	38.96
Zm00001d017079_P001	Maize	cytosol	41.99	38.62
HORVU6Hr1G053490.2	Barley	cytosol	42.16	38.6
Bra032187.1-P	Field mustard	cytosol	31.88	38.2
Zm00001d050959_P001	Maize	cytosol, mitochondrion, plastid	41.46	37.96
EES05363	Sorghum	cytosol, nucleus, plastid	42.51	37.95
EES10995	Sorghum	mitochondrion	42.86	37.61
Bra024915.1-P	Field mustard	cytosol	36.06	36.9
Bra037846.1-P	Field mustard	cytosol	33.8	36.88
Os04t0477000-01	Rice	cytosol, mitochondrion, plastid	39.72	36.36
Bra012166.1-P	Field mustard	cytosol	35.54	36.23
Bra011301.1-P	Field mustard	cytosol	36.06	35.88
Bra017837.1-P	Field mustard	cytosol	35.19	34.95
Bra010603.1-P	Field mustard	cytosol	34.84	34.78
Bra039820.1-P	Field mustard	cytosol	37.28	34.13
Bra005737.1-P	Field mustard	cytosol	33.97	33.16
Bra008815.1-P	Field mustard	cytosol	30.66	29.0
Bra010771.1-P	Field mustard	cytosol, mitochondrion, nucleus	32.23	28.2
Bra036858.1-P	Field mustard	cytosol	27.7	27.7
Bra032391.1-P	Field mustard	cytosol, mitochondrion, nucleus	31.88	27.69
Bra033365.1-P	Field mustard	cytosol	30.31	27.62
Bra037460.1-P	Field mustard	cytosol	29.79	27.58
Bra012158.1-P	Field mustard	cytosol	28.05	26.79
Bra029894.1-P	Field mustard	plastid	29.79	26.47
Bra023423.1-P	Field mustard	cytosol	25.44	26.45
Bra024285.1-P	Field mustard	cytosol	32.93	26.07
Bra009047.1-P	Field mustard	cytosol	28.57	26.03
Bra037773.1-P	Field mustard	cytosol	33.28	25.92
Bra032564.1-P	Field mustard	cytosol, plastid	28.75	25.86
Bra012082.1-P	Field mustard	cytosol	30.14	25.86
Bra025440.1-P	Field mustard	cytosol	25.78	25.83
Bra032401.1-P	Field mustard	cytosol	27.18	25.7
Bra001349.1-P	Field mustard	plastid	25.44	25.04
Bra031830.1-P	Field mustard	cytosol	24.04	25.0
Bra037606.1-P	Field mustard	cytosol	27.87	24.96
Bra022805.1-P	Field mustard	cytosol	24.56	24.52
Bra018309.1-P	Field mustard	cytosol, plastid	25.09	24.37
Bra036043.1-P	Field mustard	cytosol	23.17	24.27
Bra010770.1-P	Field mustard	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:Bra025208.1	EnsemblPlants:Bra025208.1-P	EnsemblPlantsGene:Bra025208	Gene3D:3.30.710.10	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0016020	InterPro:IPR027356	InterPro:NPH3_dom	InterPro:SKP1/BTB/POZ_sf	ncoils:Coil
PANTHER:PTHR32370	PANTHER:PTHR32370:SF9	PFAM:PF03000	PFscan:PS51649	SEG:seg	SUPFAM:SSF54695
UniParc:UPI000253F697	UniProt:M4E8V2	MapMan:35.1	:	:	:

Description

AT3G26490 (E=2e-235) | phototropic-responsive NPH3 family protein

Coordinates

chrA06:-:22776855..22778998

Molecular Weight (calculated)

64831.2 Da

IEP (calculated)

8.148

GRAVY (calculated)

-0.245

Length

574 amino acids

Sequence
(BLAST)

001: MKFMELGFRP DTFYTVEAVR SVSSDLQNDL IIQVKSTKYL LHKFPMLSKC LRLKDLVSSQ SQEPETSQEQ KVIQLVDFPG ETEAFELCAK FCYGITITLS
101: AHNVVAVRCA AEYLGMTEEV ELGETENLVQ RLEHFLTSCV FKSWRDSLVA LQTTKALPSW SEDLGITSRC IEAIANGVNA SPGDDFSNVM ETGLSRNRSR
201: RRRDESLCNG KAESSRWWGE DLADLDLDLY KRTMVAIKSS NRNVSPRLIG NALRIYASKW LPSIEESSPV LESVISLLPT QRSAVPCSFL LQLLKTVNVM
301: NVSPTSKMEL AVKAGNQLDK ATVSELLIPL SDKSGMLYDV DVVTMMVKQF LSQISPERRP TRTQHRRSRS EENMEEIQEI RGSLSSSSFP PLLVKVAKLV
401: DSYLQEVARD VNLTVSNFVE LAESIPDLSR ISHDDLYKAI DIYLQVHQKI DKIERKRLCR ILDCKKLSVE ASKNAAQNQL LPLRVIVQIL FVEQARASIV
501: TNTNNITNNE TAVLRRSFTT RREEDADLER VEVKPNGGFQ STPSRFMALC SIPRQPKKMF CKLLSISRSL SQRI

Best Arabidopsis Sequence Match ( AT3G26490.1 )
(BLAST)

001: MKFMELGFRP DTFYTVESVR SVSSDLLNDL VIQVKSTKYL LHKFPMLSKC LRLKNLVSSQ ETETSQEQQV IQLVDFPGET EAFELCAKFC YGITITLCAH
101: NVVAVRCAAE YLGMTEEVEL GETENLVQRL ELFLTTCVFK SWRDSYVTLQ TTKVLPLWSE DLGITNRCIE AIANGVTVSP GEDFSTQLET GLLRNRSRIR
201: RDEILCNGGG GSKAESLRWW GEDLAELGLD LYRRTMVAIK SSHRKISPRL IGNALRIYAS KWLPSIQESS ADSNLVLESV ISLLPEEKSS VPCSFLLQLL
301: KMANVMNVSH SSKMELAIKA GNQLDKATVS ELLIPLSDKS GMLYDVDVVK MMVKQFLSHI SPEIRPTRTR TEHRRSRSEE NINLEEIQEV RGSLSTSSSP
401: PPLLSKVAKL VDSYLQEIAR DVNLTVSKFV ELAETIPDTS RICHDDLYNA IDVYLQVHKK IEKCERKRLC RILDCKKLSV EASKKAAQNE LLPLRVIVQI
501: LFVEQARATL ATTRNNITTN ETAVLKRSFT TRREEGGQEE EERDETKPSG GFLQSTPSRF MALCAIPRQP KKLLCKLLSI SRSLSQRI

Arabidopsis Description

BTB/POZ domain-containing protein At3g26490 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIM6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.