Factsheet for Solyc05g013570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047866	Potato	cytosol	93.11	90.45
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	75.08	72.7
CDY72257	Canola	cytosol	60.0	72.33
CDY72267	Canola	cytosol	60.0	72.33
KRH74516	Soybean	cytosol	70.49	69.92
KRH45579	Soybean	nucleus	71.97	69.24
KRH69640	Soybean	cytosol	71.64	68.71
KRG99441	Soybean	cytosol	71.15	68.67
AT1G67900.2	Thale cress	nucleus	70.33	67.99
Bra004064.1-P	Field mustard	cytosol	68.52	66.45
GSMUA_Achr10P...	Banana	cytosol	56.23	60.92
GSMUA_Achr8P16390_001	Banana	cytosol	46.39	54.21
CDX83620	Canola	cytosol	47.87	53.38
Bra025208.1-P	Field mustard	cytosol	49.84	52.96
CDY13635	Canola	cytosol	49.84	52.96
AT3G26490.3	Thale cress	cytosol	50.16	52.04
HORVU6Hr1G053490.2	Barley	cytosol	48.52	47.21
TraesCS6A01G208800.2	Wheat	cytosol	48.52	47.21
TraesCS6D01G192300.1	Wheat	cytosol	48.36	47.05
TraesCS6B01G237800.1	Wheat	cytosol	48.2	46.96
Zm00001d017079_P001	Maize	cytosol	47.54	46.47
EES05363	Sorghum	cytosol, nucleus, plastid	48.36	45.88
Zm00001d050959_P001	Maize	cytosol, mitochondrion, plastid	46.89	45.61
Zm00001d003297_P001	Maize	mitochondrion	45.25	44.81
Os04t0477000-01	Rice	cytosol, mitochondrion, plastid	45.74	44.5
EES10995	Sorghum	mitochondrion	46.07	42.97
Solyc10g049660.1.1	Tomato	cytosol	42.13	42.06
Solyc01g107180.2.1	Tomato	cytosol	43.11	42.01
Solyc08g006870.2.1	Tomato	cytosol	42.3	41.95
Solyc02g092480.2.1	Tomato	cytosol	42.95	41.72
Solyc03g044090.2.1	Tomato	cytosol	41.64	40.32
Solyc10g047530.1.1	Tomato	cytosol	38.03	34.42
Solyc01g105680.2.1	Tomato	nucleus	37.05	33.78
Solyc09g007820.1.1	Tomato	cytosol	31.64	32.33
Solyc02g021640.2.1	Tomato	nucleus	32.95	31.96
Solyc02g092560.2.1	Tomato	cytosol, nucleus	30.82	31.54
Solyc05g051580.2.1	Tomato	cytosol	30.98	30.29
Solyc02g090070.2.1	Tomato	nucleus	32.13	30.11
Solyc02g064720.2.1	Tomato	cytosol	29.84	30.08
Solyc09g061250.2.1	Tomato	cytosol	29.67	29.82
Solyc09g048980.2.1	Tomato	cytosol	25.41	29.36
Solyc11g066730.1.1	Tomato	cytosol	30.16	29.16
Solyc01g098820.2.1	Tomato	cytosol, extracellular	25.57	28.16
Solyc07g043130.2.1	Tomato	cytosol	26.39	27.95
Solyc09g074630.2.1	Tomato	cytosol	22.79	27.2

Protein Annotations

EnsemblPlants:Solyc05g013570.2.1	EnsemblPlantsGene:Solyc05g013570.2	Gene3D:3.30.710.10	InterPro:IPR027356	InterPro:NPH3_dom	InterPro:SKP1/BTB/POZ_sf
PANTHER:PTHR32370	PANTHER:PTHR32370:SF9	PFAM:PF03000	PFscan:PS51649	SEG:seg	SUPFAM:SSF54695
UniParc:UPI0002765ECE	UniProt:K4BY78	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5:-:6847219..6849746

Molecular Weight (calculated)

68132.5 Da

IEP (calculated)

8.690

GRAVY (calculated)

-0.146

Length

610 amino acids

Sequence
(BLAST)

001: MKFMKLGSRP DTFITTEAVR SVNSEVISDL IVQVKGSRYL LHKFPLLSKC SRLQRLCSEI PETSQHQIVQ LPDFPGGIEA FEICAKFCYG ITITLSAYNI
101: VAARCAAEYL QMTEDVEKGN LIYKLEVFFN SCILSGWKDS IVTLQTTKSF PLWSEDLVIT SRCIEAIASK VLANPNLSRR GPRDDISCVE SDSRRHNKVS
201: SKVWWAEDLA ELSIDLYWRS MIAIKSGGKV AAAVIGDALR VYASRWLPNI SKYANVEKQI VHDPSESDSI GKHRLLLESI ISLLPAEKGA VSCSFLLKLV
301: KATNLLKGSC SSKMELARRV GLQLEDASVN DLLIPCVSHT CDTIYDVDIV ITILQQFMLQ VQSPPTSPVT RKVDFERRRS RSAENIDLEF EESRRSSSAS
401: HSSKLKVAKL VDGYLQVIAS DTSLPLSKFI SIAEAIPEFA RLDHDDLYKA IDIYLKGHPG LNKSERKRLC RILDCKKLSM DICMHAAQNE LLPLRVVVQV
501: LFFEQARSAM SGGHVTELPS NIKALLANHH PQTANTSASF NKDKMTPLND DQWSNASALK SPKSSNLSTL KMKLAEEDDL HEIGKSSRIK ALCLLPNRPK
601: KMLSKLWSNK

Best Arabidopsis Sequence Match ( AT1G67900.4 )
(BLAST)

001: MKFMKLGSRP DTFYTSEDLR CVSSEVSSDF TIEVSGSRYL LHKFPLLSKC LRLQRMCSES PESIIQLPEF PGGVEAFELC AKFCYGITIT ISAYNIVAAR
101: CAAEYLQMSE EVEKGNLVYK LEVFFNSCIL NGWRDSIVTL QTTKAFPLWS EDLAITSRCI EAIASKVLSH PSKVSLSHSH SRRVRDDDMS SNRAAASSRG
201: WWAEDIAELG IDLYWRTMIA IKSGGKVPAS LIGDALRVYA SKWLPTLQRN RKVVKKKEDS DSDSDTDTSS KHRLLLESII SLLPAEKGAV SCSFLLKLLK
301: AANILNASTS SKMELARRVA LQLEEATVSD LLIPPMSYKS ELLYDVDIVA TILEQFMVQG QTSPPTSPLR GKKGMMDRRR RSRSAENIDL EFQESRRSSS
401: ASHSSKLKVA KLVDGYLQQI ARDVNLPLSK FVTLAESVPE FSRLDHDDLY RAIDIYLKAH KNLNKSERKR VCRVLDCKKL SMEACMHAAQ NEMLPLRVVV
501: QVLFYEQARA AAATNNGEKN TTELPSNIKA LLAAHNIDPS NPNAAAFSTT TSIAAPEDRW SVSGLKSPKS KLSGTLRSKL AEDEEVDERF MNGDGGRTPS
601: RFKAFCAIPG RPKKMFSKLL SINRNSSDKN C

Arabidopsis Description

BTB/POZ domain-containing protein At1g67900 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.