Factsheet for VIT_01s0137g00820.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
golgi 1
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74516	Soybean	cytosol	77.14	79.02
KRH69640	Soybean	cytosol	78.57	77.83
KRG99441	Soybean	cytosol	77.62	77.37
PGSC0003DMT400047866	Potato	cytosol	76.83	77.07
KRH45579	Soybean	nucleus	76.83	76.34
CDY72257	Canola	cytosol	60.63	75.49
CDY72267	Canola	cytosol	60.63	75.49
Solyc05g013570.2.1	Tomato	nucleus	72.7	75.08
AT1G67900.2	Thale cress	nucleus	73.65	73.53
Bra004064.1-P	Field mustard	cytosol	71.75	71.86
GSMUA_Achr10P...	Banana	cytosol	58.73	65.72
GSMUA_Achr8P16390_001	Banana	cytosol	49.84	60.15
CDX83620	Canola	cytosol	49.37	56.86
CDY13635	Canola	cytosol	51.11	56.1
Bra025208.1-P	Field mustard	cytosol	51.11	56.1
AT3G26490.3	Thale cress	cytosol	51.43	55.1
TraesCS6A01G208800.2	Wheat	cytosol	51.11	51.36
TraesCS6D01G192300.1	Wheat	cytosol	51.11	51.36
TraesCS6B01G237800.1	Wheat	cytosol	50.95	51.28
HORVU6Hr1G053490.2	Barley	cytosol	50.48	50.72
Zm00001d017079_P001	Maize	cytosol	50.0	50.48
EES05363	Sorghum	cytosol, nucleus, plastid	51.43	50.39
Zm00001d050959_P001	Maize	cytosol, mitochondrion, plastid	49.37	49.6
Zm00001d003297_P001	Maize	mitochondrion	46.83	47.89
Os04t0477000-01	Rice	cytosol, mitochondrion, plastid	47.3	47.53
VIT_03s0091g00680.t01	Wine grape	cytosol	46.19	46.63
VIT_07s0129g00250.t01	Wine grape	cytosol	46.35	46.42
VIT_00s0194g00080.t01	Wine grape	cytosol	43.65	46.37
EES10995	Sorghum	mitochondrion	47.14	45.41
VIT_04s0008g06630.t01	Wine grape	cytosol	42.22	42.9
VIT_00s1395g00010.t01	Wine grape	cytosol	28.89	38.97
VIT_00s0665g00050.t01	Wine grape	cytosol	29.52	37.13
VIT_03s0038g00270.t01	Wine grape	cytosol	38.57	36.05
VIT_10s0003g04490.t01	Wine grape	cytosol	35.71	35.6
VIT_08s0040g01800.t01	Wine grape	cytosol	34.6	34.94
VIT_13s0019g04420.t01	Wine grape	cytosol	33.97	34.57
VIT_07s0005g06300.t01	Wine grape	cytosol	32.06	32.79
VIT_00s0207g00230.t01	Wine grape	cytosol	33.02	32.76
VIT_06s0061g01140.t01	Wine grape	cytosol	29.52	32.07
VIT_07s0129g00380.t01	Wine grape	cytosol	32.22	31.92
VIT_08s0056g00610.t01	Wine grape	cytosol	29.05	30.4
VIT_06s0004g08230.t01	Wine grape	mitochondrion	27.3	30.07
VIT_07s0104g01440.t01	Wine grape	plastid	29.37	29.32

Protein Annotations

EntrezGene:100267978	wikigene:100267978	Gene3D:3.30.710.10	MapMan:35.1	EMBL:AM472446	ProteinID:CAN63893
ProteinID:CAN63893.1	ProteinID:CCB43977	ProteinID:CCB43977.1	UniProt:F6GVL5	EMBL:FN594954	InterPro:IPR027356
EntrezGene:LOC100267978	wikigene:LOC100267978	InterPro:NPH3_dom	PFAM:PF03000	PFscan:PS51649	PANTHER:PTHR32370
PANTHER:PTHR32370:SF9	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	TIGR:TC59700	UniParc:UPI000210AC47	ArrayExpress:VIT_01s0137g00820
EnsemblPlantsGene:VIT_01s0137g00820	EnsemblPlants:VIT_01s0137g00820.t01	unigene:Vvi.16405	RefSeq:XP_002282444	RefSeq:XP_002282444.2	RefSeq:XP_010650462.1
RefSeq:XP_010650467.1	RefSeq:XP_010650472.1	RefSeq:XP_019075566.1	RefSeq:XP_019075567.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:7324477..7327341

Molecular Weight (calculated)

70083.5 Da

IEP (calculated)

8.668

GRAVY (calculated)

-0.194

Length

630 amino acids

Sequence
(BLAST)

001: MKFMKLGSRP DTFYTTEAVR SVSSEISSDL IVQVKGSRYM LHKFPLLSKC LRLQRLCSEF HESAQPQIVQ LPDFPGGVDA FELCAKFCYG ITITLSAFNI
101: VSARCAAEYL QMTEDVEKGN LIYKLEVFFN SCILHGWKDS IVTLQSTKSY PLWSEDLGIT SRCIEAIASR VLSHPSKVNL SHSYSRRGRD DLSSCNGTES
201: LRHRPVSKGW WAEDIAELGI DLYWRTIIAI KSGGKVPSNL IGDALKIYAS RWLPNISKDG TIMKRAASDP DSDSIGEITS KHRFLLESIV SLLPAEKGAV
301: SCSFLLKLLK AANILKASSS SKMELARRVG IQLEEATVND LLIPSLSYTN DTLYDLDIVM IILEQFMLQG QSPPITPPRV KGSFEKRRSR SAENVDFGFQ
401: ESRRSSSASH SSKLRVAKLV DGYLQEIARD VNLPLSKMIA LAEAVPDFAR LDHDDLYRAI DIYLKAHPDL SKSERKRLCR ILDCKKLSVE ACMHAAQNEL
501: LPLRVVVQVL FFEQARAAMA GGQVTELPNN IKALLATHNV DPSRPPAPLS TTTTVAAEDQ WSISGLKSPK SSLSTLRMKL AEDDDLEEND IHPDGIGRSS
601: KLKALCSIPT RPKRMLSKLW SINRSASEKN

Best Arabidopsis Sequence Match ( AT1G67900.4 )
(BLAST)

001: MKFMKLGSRP DTFYTSEDLR CVSSEVSSDF TIEVSGSRYL LHKFPLLSKC LRLQRMCSES PESIIQLPEF PGGVEAFELC AKFCYGITIT ISAYNIVAAR
101: CAAEYLQMSE EVEKGNLVYK LEVFFNSCIL NGWRDSIVTL QTTKAFPLWS EDLAITSRCI EAIASKVLSH PSKVSLSHSH SRRVRDDDMS SNRAAASSRG
201: WWAEDIAELG IDLYWRTMIA IKSGGKVPAS LIGDALRVYA SKWLPTLQRN RKVVKKKEDS DSDSDTDTSS KHRLLLESII SLLPAEKGAV SCSFLLKLLK
301: AANILNASTS SKMELARRVA LQLEEATVSD LLIPPMSYKS ELLYDVDIVA TILEQFMVQG QTSPPTSPLR GKKGMMDRRR RSRSAENIDL EFQESRRSSS
401: ASHSSKLKVA KLVDGYLQQI ARDVNLPLSK FVTLAESVPE FSRLDHDDLY RAIDIYLKAH KNLNKSERKR VCRVLDCKKL SMEACMHAAQ NEMLPLRVVV
501: QVLFYEQARA AAATNNGEKN TTELPSNIKA LLAAHNIDPS NPNAAAFSTT TSIAAPEDRW SVSGLKSPKS KLSGTLRSKL AEDEEVDERF MNGDGGRTPS
601: RFKAFCAIPG RPKKMFSKLL SINRNSSDKN C

Arabidopsis Description

BTB/POZ domain-containing protein At1g67900 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.