Factsheet for VIT_13s0019g04420.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g01800.t01	Wine grape	cytosol	68.5	67.95
GSMUA_Achr9P19480_001	Banana	extracellular, plasma membrane	50.4	61.78
KRG91918	Soybean	cytosol	61.39	61.59
KRH34860	Soybean	cytosol	61.39	61.49
GSMUA_AchrUn_...	Banana	cytosol	42.16	61.41
GSMUA_Achr2P02890_001	Banana	cytosol	55.41	60.82
AT5G13600.1	Thale cress	cytosol	56.7	59.39
VIT_10s0003g04490.t01	Wine grape	cytosol	59.61	58.39
CDX85639	Canola	cytosol	53.31	57.69
Bra008815.1-P	Field mustard	cytosol	53.96	55.02
CDY09812	Canola	cytosol	53.96	54.93
CDX69627	Canola	cytosol	53.8	54.86
Zm00001d043271_P001	Maize	cytosol	55.74	53.32
HORVU3Hr1G076740.1	Barley	cytosol	55.09	53.03
TraesCS3B01G349200.1	Wheat	cytosol	55.41	53.01
TraesCS3D01G314000.1	Wheat	cytosol	55.57	52.76
TraesCS3A01G317300.1	Wheat	cytosol	55.25	52.7
Os01t0780600-01	Rice	plasma membrane	56.06	52.66
EES03716	Sorghum	cytosol	54.93	52.23
Bra023423.1-P	Field mustard	cytosol	46.53	52.17
Os04t0636500-01	Rice	plasma membrane	52.18	50.16
Zm00001d002146_P001	Maize	cytosol	48.79	48.71
EES11510	Sorghum	cytosol	49.27	47.96
TraesCS2B01G557300.2	Wheat	cytosol	47.33	45.29
TraesCS2D01G529600.1	Wheat	cytosol	47.01	44.77
TraesCS2A01G526900.1	Wheat	cytosol	46.69	44.33
VIT_00s0207g00230.t01	Wine grape	cytosol	42.49	41.42
VIT_06s0061g01140.t01	Wine grape	cytosol	37.0	39.48
VIT_07s0005g06300.t01	Wine grape	cytosol	35.86	36.04
VIT_00s1395g00010.t01	Wine grape	cytosol	27.14	35.97
VIT_04s0008g06630.t01	Wine grape	cytosol	35.7	35.65
VIT_03s0038g00270.t01	Wine grape	cytosol	37.16	34.12
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	34.57	33.97
VIT_08s0056g00610.t01	Wine grape	cytosol	32.79	33.72
VIT_00s0665g00050.t01	Wine grape	cytosol	27.14	33.53
VIT_07s0104g01440.t01	Wine grape	plastid	33.93	33.28
VIT_07s0129g00250.t01	Wine grape	cytosol	33.6	33.07
VIT_03s0091g00680.t01	Wine grape	cytosol	33.12	32.85
VIT_07s0129g00380.t01	Wine grape	cytosol	33.28	32.39
VIT_06s0004g08230.t01	Wine grape	mitochondrion	29.4	31.82
VIT_00s0194g00080.t01	Wine grape	cytosol	28.92	30.19

Protein Annotations

EntrezGene:100265004	wikigene:100265004	Gene3D:3.30.710.10	MapMan:35.1	EMBL:AM437607	InterPro:BTB/POZ_dom
ProteinID:CAN71724	ProteinID:CAN71724.1	ProteinID:CCB56176	ProteinID:CCB56176.1	ncoils:Coil	UniProt:F6HNF7
EMBL:FN595998	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356
EntrezGene:LOC100265004	wikigene:LOC100265004	InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF46	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI00015C9B52
ArrayExpress:VIT_13s0019g04420	EnsemblPlantsGene:VIT_13s0019g04420	EnsemblPlants:VIT_13s0019g04420.t01	RefSeq:XP_002274032	RefSeq:XP_002274032.1	SEG:seg

Description

No Description!

Coordinates

chr13:+:5813987..5818846

Molecular Weight (calculated)

68895.8 Da

IEP (calculated)

5.418

GRAVY (calculated)

-0.144

Length

619 amino acids

Sequence
(BLAST)

001: MACMKLGSKP EAFHLDGQTL LCSTGLPSDV IIEVGEMSFH LHKFPLLSRS GVIENLIGES SGEDERNCIL QLHDIPGGAK TFLLVAKFCY GVKIELTALN
101: VVSLRCAAEH LQMKENFGEG NLVSQTENFL NEVFGDWTDS LKALEACEEV LPHAEELHIV SRCINSLAVK ASADPSLVGW PESGGEAAQS PVGTVLWNGI
201: LTSSNPHPVS DDWWYEDVSC LKLPMYKRLI LAVESRAMRP ERISGSLMYY TKKYLPLMGR QSSFQNGNRA ALGSTVSALS DADQRNLLEE IVELLPDQKG
301: VTSTKFLLRL LRTSMLLHAS PSCRENLEKR IGAQLDQAVL EDLIIPNLGY SVETLYDIDC VQRILDHFML VDRDVTDSTN CIVDEAQLMV GSHSLTRMTM
401: VANLVDGYLA EVAPDVNLKL QKFQSLAAVI PDYARPLDDG IYRAIDIYLK AHPWLTDSER ELICRLVNCQ KLSLEASTHA AQNERLPLRL IVQVLFFEQL
501: RLRTSIAGWF FVSDNLETSQ DPSGNLALPR RSTTQDEIVA VDDMRERVSE LEKECLSMKK EIEKLVTTKR SWNIFCRRLG FRLKPNSSGP KASNNAKASP
601: SSTTPLLNTS QNQHSGKLV

Best Arabidopsis Sequence Match ( AT5G03250.1 )
(BLAST)

001: MAFMRLGSKS EAFHREGQTW LCTTGLVSDV TIEVGDMKFH LHKFPLLSRS GLLERLIEES STDDGSGCVL SLDEIPGGGK TFELVTKFCY GVKIELTAFN
101: VVSLRCAAEY LEMTDNYGEG NLVGMTETFL NEVFGNWTDS IKALQTCEEV IDYAEDLHII SRCVDSLAVK ACADPSLFNW PVGGGKNATS GQNTEDESHL
201: WNGISASGKM LQHTGEDWWF DDASFLSLPL FKRLITAIEA RGMKLENIAM AVMYYTRKHV PLMNRQVNMD EQVIETPNPS EEDQKTCLEE IVGLLPSKKG
301: VNPTKFLLRL LQTAMVLHAS QSSRENLERR IGNQLDQAAL VDLLIPNMGY SETLYDVECV LRMIEQFVSS TEQAGIVPSP CIIEEGHLVK DGADLLTPTT
401: LVATLVDGYL AEVAPDVNLK LAKFEAIAAA IPDYARPLDD GVYHAIDVYL KAHPWITDSE REHICRLMNC QKLSLEASTH AAQNERLPLR VIVQVLFFEQ
501: LRLRTSVSGW FFVSENLDNP DNQHGANGGL LKPRGENVRE RVSELEKECM NMKQELHKLV RTKRSWKNFT RKLNFKKKSE CCKPKDQATP AI

Arabidopsis Description

BTB/POZ domain-containing protein At5g03250 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.