Factsheet for VIT_00s0194g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01932	Soybean	cytosol	62.39	63.25
KRH51214	Soybean	cytosol	62.23	62.33
KRH36642	Soybean	cytosol	59.87	59.27
KRH11633	Soybean	cytosol	60.2	59.2
Bra024915.1-P	Field mustard	cytosol	55.99	59.18
CDX77798	Canola	cytosol	55.99	59.18
CDY17704	Canola	cytosol	55.99	59.18
GSMUA_Achr3P12020_001	Banana	cytosol	47.22	51.28
AT5G47800.2	Thale cress	cytosol	55.99	49.4
TraesCS5A01G171100.1	Wheat	cytosol	47.55	49.13
KRH62777	Soybean	cytosol	25.97	48.89
TraesCS5D01G175800.1	Wheat	cytosol	47.72	48.71
GSMUA_Achr3P14590_001	Banana	cytosol	47.05	48.69
Zm00001d019944_P001	Maize	cytosol	47.55	48.54
KXG35200	Sorghum	cytosol	46.71	47.92
TraesCS5B01G168600.3	Wheat	cytosol	47.55	47.0
KRG90163	Soybean	cytosol	37.94	46.88
Os09t0266600-01	Rice	cytosol	31.2	44.47
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	46.37	43.65
HORVU0Hr1G012710.2	Barley	cytosol, plastid	40.3	41.07
VIT_03s0091g00680.t01	Wine grape	cytosol	36.93	35.1
VIT_00s1395g00010.t01	Wine grape	cytosol	27.49	34.9
VIT_04s0008g06630.t01	Wine grape	cytosol	36.26	34.68
VIT_07s0129g00250.t01	Wine grape	cytosol	36.42	34.34
VIT_00s0665g00050.t01	Wine grape	cytosol	27.66	32.73
VIT_03s0038g00270.t01	Wine grape	cytosol	34.4	30.27
VIT_10s0003g04490.t01	Wine grape	cytosol	32.04	30.06
VIT_08s0040g01800.t01	Wine grape	cytosol	30.69	29.17
VIT_13s0019g04420.t01	Wine grape	cytosol	30.19	28.92
VIT_07s0005g06300.t01	Wine grape	cytosol	28.67	27.6
VIT_00s0207g00230.t01	Wine grape	cytosol	29.17	27.24
VIT_07s0129g00380.t01	Wine grape	cytosol	28.84	26.89
VIT_08s0056g00610.t01	Wine grape	cytosol	26.64	26.25
VIT_06s0004g08230.t01	Wine grape	mitochondrion	24.96	25.87
VIT_07s0104g01440.t01	Wine grape	plastid	26.81	25.2
VIT_06s0061g01140.t01	Wine grape	cytosol	24.62	25.17

Protein Annotations

EntrezGene:100855145	wikigene:100855145	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ProteinID:CBI25736
ProteinID:CBI25736.3	UniProt:D7T5F3	EMBL:FN595527	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000210	InterPro:IPR027356	EntrezGene:LOC100855145	wikigene:LOC100855145	InterPro:NPH3_dom	PFAM:PF03000
PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF19	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695
UniParc:UPI0001BE2CA8	ArrayExpress:VIT_00s0194g00080	EnsemblPlantsGene:VIT_00s0194g00080	EnsemblPlants:VIT_00s0194g00080.t01	RefSeq:XP_003635037	RefSeq:XP_003635037.1
RefSeq:XP_010646247.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:10586711..10589305

Molecular Weight (calculated)

67310.9 Da

IEP (calculated)

8.624

GRAVY (calculated)

-0.413

Length

593 amino acids

Sequence
(BLAST)

001: MKFMKLGTRP DTFYTEEATR TVSSDVPSDL VIRINNITYL LHKFPLLPKC GLLQRLLTDS GDSDNDSVEL HDIPGGEDAF ELCAKFCYGI TINLSAHNFV
101: RAFCAAKFLR MTESVEKGNF VLKLEAFFNS CILEGWKDSV VALQSTGKMI EWSENLGITR RCIDSIVEKI LTPPAKVNWS FTYSRPGYNK KRHQSVPRDW
201: WTEDISDLDI DLFRFIVTAL RSTNMVQPQL IGEALHVYAS RWLPDTTKIR PPESSASLAN EPVEKNRRVL ETIVSMIPAD RGSVSVNFLL RLLSTASYLG
301: ASPVTKTELI RRCGLQLDEV TVDDLLLPSH LSSDQYCYDI DMISVVLESF LVLWRIQYPA PSQDSQFMRS IRKVGKVIDC YLQVAAKDAN MPVMKFISLA
401: EALPDTARPK HDDLYKAINI YLKEHPDLNK AEKKRLCRIL DCQKLSPDVC AHAVKNERLP LRTVVQVLFF DQERGFKATS QKLPPRGLLS RAQEAPFSET
501: VQSKPKLPPD DRANRQEGTR RAPSPAIPER DQHKKLHLKS ERNIVISREP GEVESEKVRE TREEGISGSK MNPRKTMQGK SSSDHGHYKG RDR

Best Arabidopsis Sequence Match ( AT5G47800.3 )
(BLAST)

001: MKFMKIGTKP DTFYTQEASR ILITDTPNDL VIRINNTTYH LHRSCLVPKC GLLRRLCTDL EESDTVTIEL NDIPGGADAF ELCAKFCYDI TINLSAHNLV
101: NALCASKFLR MSDSVDKGNL LPKLEAFFHS CILQGWKDSI VTLQSTTKLP EWCENLGIVR KCIDSIVEKI LTPTSEVSWS HTYTRPGYAK RQHHSVPRDW
201: WTEDISDLDL DLFRCVITAA RSTFTLPPQL IGEALHVYTC RWLPYFKSNS HSGFSVKENE AALERHRRLV NTVVNMIPAD KGSVSEGFLL RLVSIASYVR
301: ASLTTKTELI RKSSLQLEEA TLEDLLLPSH SSSHLHRYDT DLVATVLESF LMLWRRQSSA HLSSNNTQLL HSIRKVAKLI DSYLQAVAQD VHMPVSKFVS
401: LSEAVPDIAR QSHDRLYKAI NIFLKVHPEI SKEEKKRLCR SLDCQKLSAQ VRAHAVKNER MPLRTVVQAL FFDQESGSKG ASSRSESQEL FTRGKETPTD
501: EHSMMHKLHL GPASTGKAKN VLEEGCKRGE EKTRSSTDPK KIVWKGTGSE HKHHISRDR

Arabidopsis Description

Phototropic-responsive NPH3 family protein [Source:TAIR;Acc:AT5G47800]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.