Factsheet for VIT_00s0665g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1395g00010.t01	Wine grape	cytosol	88.82	95.29
Solyc05g051580.2.1	Tomato	cytosol	68.06	54.65
KRH59336	Soybean	cytosol	68.66	54.6
PGSC0003DMT400018688	Potato	cytosol	68.06	54.47
KRH43181	Soybean	cytosol	67.86	54.31
AT5G10250.2	Thale cress	cytosol	62.08	50.0
CDX69851	Canola	cytosol	62.28	49.52
Bra009047.1-P	Field mustard	cytosol	61.88	49.21
CDX96986	Canola	cytosol	60.08	48.08
VIT_03s0038g00270.t01	Wine grape	cytosol	51.1	37.98
VIT_04s0008g06630.t01	Wine grape	cytosol	37.52	30.32
VIT_07s0129g00250.t01	Wine grape	cytosol	37.33	29.73
VIT_03s0091g00680.t01	Wine grape	cytosol	36.93	29.65
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	37.13	29.52
VIT_10s0003g04490.t01	Wine grape	cytosol	36.53	28.96
VIT_07s0005g06300.t01	Wine grape	cytosol	35.53	28.9
VIT_00s0207g00230.t01	Wine grape	cytosol	36.33	28.66
VIT_08s0056g00610.t01	Wine grape	cytosol	33.93	28.24
VIT_07s0129g00380.t01	Wine grape	cytosol	35.33	27.83
VIT_00s0194g00080.t01	Wine grape	cytosol	32.73	27.66
VIT_08s0040g01800.t01	Wine grape	cytosol	33.93	27.24
VIT_13s0019g04420.t01	Wine grape	cytosol	33.53	27.14
VIT_06s0004g08230.t01	Wine grape	mitochondrion	30.54	26.75
VIT_07s0104g01440.t01	Wine grape	plastid	33.53	26.62
VIT_06s0061g01140.t01	Wine grape	cytosol	29.34	25.34

Protein Annotations

EntrezGene:100258797	wikigene:100258797	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ProteinID:CCB50076
ProteinID:CCB50076.1	UniProt:F6HCY1	EMBL:FN595529	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000210	InterPro:IPR027356	EntrezGene:LOC100258797	wikigene:LOC100258797	InterPro:NPH3_dom	PFAM:PF00651
PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF37	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI0002109E12	ArrayExpress:VIT_00s0665g00050	EnsemblPlantsGene:VIT_00s0665g00050	EnsemblPlants:VIT_00s0665g00050.t01
RefSeq:XP_002262774	RefSeq:XP_002262774.2	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:33832162..33835510

Molecular Weight (calculated)

56697.1 Da

IEP (calculated)

5.724

GRAVY (calculated)

-0.251

Length

501 amino acids

Sequence
(BLAST)

001: MKKSLTLGRP LSPGSESDYN DQVHDQSIVV PSKLVTIADS FEKKEHSWFV TSQVPTDLTI QVQDITFYAH KYPLVSRCGY ISQIELQPSI SNLGYDLKLE
101: NFPGGSETFE IILKFCYGLP VDLNPNNAAS LRCASEFLEM TEELDEGNLI SKTEVFLTFV VLSSWRDSIT VLKSCENLSP WAENLQIVRR CCDSIAWKAS
201: QDNSTTGETI SEEHWWFDDV ATLRIDHFMR IMTTARAKGL KPEIIGSCIM HYAEKWLPGM DVALEGPRAF GCGKNELQLS ILSGRRQEGG VGHNKELKMI
301: IESLVSILPP EKEAVSCKFL LQMLKMSVVY SATQVLVSEL EKRVGMVLQD ANVNDLLIPT YRNGDQGKLV NSSEELTMHD IDAVQRIVEY FLMHEQQQPH
401: QHKSSKLNVS KLLDNYLAEI ARDPNLSITK FHVLAEALPE NARTCHDGLY RAIDTYLKTH PSLSEHDRKR LCKVMDYEKL SLDACMHAAQ NDRLPLRIVI
501: Q

Best Arabidopsis Sequence Match ( AT5G10250.2 )
(BLAST)

001: MNSVSAAERL KSFGDAGPVC NKSIIFPSRV VTLANSFEKK DRSWYVKSQI PTDLSIQVND ITFKAHKFPL ISKCGYISSI ELKPSTSENG YHLKLENFPG
101: GADTFETILK FCYNLPLDLN PLNVAPLRCA SEYLYMTEEF EAGNLISKTE AFITFVVLAS WRDTLTVLRS CTNLSPWAEN LQIVRRCCDL LAWKACNDNN
201: IPEDVVDRNE RCLYNDIATL DIDHFMRVIT TMKARRAKPQ ITGKIIMKYA DNFLPVINDD LEGIKGYGLG KNELQFSVNR GRMEESNSLG CQEHKETIES
301: LVSVLPPQSG AVSCHFLLRM LKTSIVYSAS PALISDLEKR VGMALEDANV CDLLIPNFKN EEQQERVSSP EVYTIYNVDV VHRIFEFFLM HEQQQVLGKP
401: SISKLLDNYL AEIAKDPYLP ITKFQVLAEM LPENAWKCHD GLYRAIDMFL KTHPSLSDHD RRRLCKTMNC EKLSLDACLH AAQNDRLPLR TIVQINTQVL
501: FSEQVKMRMM MQDKLPEKEE ENSGGREDKR MSRDNEIIKT LKEELENVKK KMSELQSDYN ELQQEYERLS SKQKSSHNWG LRWQKVKKSF QTKREDEETR
601: ERTRRRSSTG QRTSFRRRMS MS

Arabidopsis Description

DOT3Phototropic-responsive NPH3 family protein [Source:TAIR;Acc:AT5G10250]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.