Factsheet for VIT_06s0061g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001154	Potato	cytosol	77.07	70.84
KRH26561	Soybean	cytosol	76.9	70.24
Solyc11g066730.1.1	Tomato	cytosol	76.21	70.05
KRH22745	Soybean	cytosol	76.21	69.83
AT3G44820.1	Thale cress	cytosol	68.45	60.98
Bra037606.1-P	Field mustard	cytosol	66.03	59.75
GSMUA_Achr10P...	Banana	cytosol	52.76	55.33
CDY29723	Canola	cytosol	65.52	54.52
CDY20341	Canola	cytosol	66.03	53.94
VIT_10s0003g04490.t01	Wine grape	cytosol	44.48	40.82
VIT_13s0019g04420.t01	Wine grape	cytosol	39.48	37.0
VIT_08s0040g01800.t01	Wine grape	cytosol	39.66	36.86
VIT_00s0207g00230.t01	Wine grape	cytosol	38.45	35.12
VIT_00s1395g00010.t01	Wine grape	cytosol	25.69	31.91
VIT_07s0005g06300.t01	Wine grape	cytosol	31.55	29.71
VIT_03s0038g00270.t01	Wine grape	cytosol	34.48	29.67
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	32.07	29.52
VIT_00s0665g00050.t01	Wine grape	cytosol	25.34	29.34
VIT_08s0056g00610.t01	Wine grape	cytosol	29.14	28.07
VIT_03s0091g00680.t01	Wine grape	cytosol	30.0	27.88
VIT_07s0129g00250.t01	Wine grape	cytosol	30.17	27.82
VIT_07s0129g00380.t01	Wine grape	cytosol	29.83	27.2
VIT_06s0004g08230.t01	Wine grape	mitochondrion	26.55	26.92
VIT_04s0008g06630.t01	Wine grape	cytosol	28.62	26.77
VIT_00s0194g00080.t01	Wine grape	cytosol	25.17	24.62
VIT_07s0104g01440.t01	Wine grape	plastid	26.55	24.41

Protein Annotations

EntrezGene:100855003	wikigene:100855003	MapMan:35.1	ProteinID:CCB44197	ProteinID:CCB44197.1	ncoils:Coil
UniProt:F6GW62	EMBL:FN594957	InterPro:IPR027356	EntrezGene:LOC100855003	wikigene:LOC100855003	InterPro:NPH3_dom
PFAM:PF03000	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF27	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695
TIGR:TC69026	UniParc:UPI000198395F	ArrayExpress:VIT_06s0061g01140	EnsemblPlantsGene:VIT_06s0061g01140	EnsemblPlants:VIT_06s0061g01140.t01	unigene:Vvi.8973
RefSeq:XP_003632267	RefSeq:XP_003632267.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:18851759..18854998

Molecular Weight (calculated)

65024.7 Da

IEP (calculated)

7.704

GRAVY (calculated)

-0.151

Length

580 amino acids

Sequence
(BLAST)

001: MFEESQGIHE AKFTTSLEGF PGGPDIFLIA VKFCYGVRVE LTPRNIIMVY CAADYLGMTD AYGEENLLSK SESFFHKTIL RNWKDCILAL QSSDPVMPMA
101: EKLHIISKCL NALSMMVSTD PSLFGWPMMM YGSLQSPGGS ILWNGINTGA RIRSSESDWW FEDISYLNVL LFKRLIQTME ARGIRSENLA GAVMYYTRKY
201: LPGLGRWQSG QSGKTMTVAS FSLTPAAVDQ RVLLESIEKL LPEKKGKSFC RFLLGLLRVA LILGVNQTCK ESLMRRIGMQ LELATLDSLL IPTYSDSDTL
301: YNNDCVEQIV HHFISSEPRI TSFSPASLDL ETSPLSGPLR KVAKLMDSYI AEVASDVNLK PGKIRSLAEA LPESSRSLHD GLYRALDIYF KAHPWLSEKE
401: KEQLCNIIDY QKLSIDACAH ASQNERLPLR VVLQVLFFEQ MQLRTALAGC LHVIDNENAP AGPITISSDM AGQIVQRDGW VTVVRENQVL KVDLERMRSR
501: VGELEEEFTK MKQEMKKVSK THSSLNSPRM VARRIGCKLL PRASDAQADT VDSTAPTPRA SVEQARSSYH SGHRKTFSLF

Best Arabidopsis Sequence Match ( AT3G44820.1 )
(BLAST)

001: MSPVAKVSEF HREGNDWFCK TGLSSDITVV VDDVKFHLHK FPLVSKCGKL ARMYEDSKST DKQSLWTTVL EEFPGGADNF LIVARFCYGA RVDITSKNLV
101: SIHCAAEYLE MTNEYGEDNL ISQVETFLHK HVLRNWKDCI LALQSSSPVL KSAEKLQMIP KLMNAVSTMV CTDPSLFGWP MMMYGTLQSP GGSILWNGIN
201: TGARMRSSGS DWWYEDISYL SVDLFKRLIK TMETKGIRAE SLAGAMMYYA RKYLPGLGRW QSGTSDSSKS RRRVVSFNLA KASSPSSMPP LDQIALLETI
301: LSLLPEKRGR SFCKFLLGLL RVAFILGVDG NCVKKLEKRI GMQLELATLD NLLILNYSDS ETLYNVDCVE RIVRHFVSSL SSSSSQLPEF SPPSLDPVTS
401: PSPAPLKKVA NLVDSYMAEV ASDVNLKPDK MRSLAAALPE SSRPLYDGLY RAFDIYFKEH PWLSDRDKEQ LCNIMDYQRL SIDACAHASH NDRLPLRVVL
501: QVLFFEQMHL RTALAGGLNV ANTETAHAVT IPGGRTGQEI VQRDGWVTVV RQNQVLKVDM QKMRSRVGEL EEEFQSIKQE MKKRVSKSSS SMSSPRLVKL
601: GCKFLLPRAS DAKNDTVQNS VSSTPRSATA DHTLPRSSRH SKHRKSFSFF G

Arabidopsis Description

BTB/POZ domain-containing protein At3g44820 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.