Factsheet for VIT_10s0003g04490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g021640.2.1	Tomato	nucleus	84.49	84.9
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	84.49	84.9
KRH12771	Soybean	cytosol	84.65	83.2
KRH37734	Soybean	cytosol	84.02	82.58
AT1G30440.1	Thale cress	cytosol, mitochondrion, nucleus	77.53	73.68
Zm00001d033240_P002	Maize	cytosol, mitochondrion, nucleus	73.26	73.61
EER91175	Sorghum	cytosol	73.26	73.38
GSMUA_Achr6P30010_001	Banana	cytosol	63.29	72.99
GSMUA_Achr5P02440_001	Banana	cytosol	66.14	72.95
GSMUA_Achr5P00550_001	Banana	cytosol	72.31	72.66
CDY09586	Canola	cytosol	75.0	72.26
CDX90249	Canola	cytosol, mitochondrion, nucleus	71.84	71.95
CDY02293	Canola	cytosol, mitochondrion, nucleus	74.84	71.78
Bra032391.1-P	Field mustard	cytosol, mitochondrion, nucleus	75.0	71.71
GSMUA_Achr4P31620_001	Banana	cytosol	66.93	70.85
GSMUA_Achr9P26110_001	Banana	cytosol	67.72	70.63
HORVU5Hr1G093120.2	Barley	cytosol	70.73	70.5
TraesCS5D01G385100.1	Wheat	plastid	70.89	70.44
TraesCS5A01G042600.1	Wheat	cytosol	67.72	67.61
TraesCS5D01G051100.1	Wheat	cytosol	67.41	67.41
Os08t0130600-01	Rice	plasma membrane	68.04	67.08
TraesCS5A01G375500.3	Wheat	peroxisome	68.35	67.08
Os12t0613250-00	Rice	plasma membrane	68.99	67.08
CDY27653	Canola	cytosol	65.51	66.99
TraesCS5B01G377600.1	Wheat	cytosol	70.89	66.08
TraesCS7D01G306400.1	Wheat	cytosol	66.61	65.47
CDX99692	Canola	cytosol, mitochondrion, nucleus	66.61	65.27
HORVU7Hr1G073650.1	Barley	cytosol	66.14	65.21
TraesCS7B01G209700.1	Wheat	cytosol	66.14	65.01
Bra025440.1-P	Field mustard	cytosol	58.86	64.92
TraesCS7A01G309700.1	Wheat	cytosol	65.82	64.7
TraesCS5B01G046200.2	Wheat	mitochondrion	65.66	64.64
EES14497	Sorghum	cytosol	66.61	63.98
Zm00001d035208_P002	Maize	cytosol	65.82	62.75
VIT_13s0019g04420.t01	Wine grape	cytosol	58.39	59.61
VIT_08s0040g01800.t01	Wine grape	cytosol	56.96	57.69
HORVU5Hr1G010370.2	Barley	plastid	67.72	54.25
VIT_00s0207g00230.t01	Wine grape	cytosol	49.05	48.82
VIT_06s0061g01140.t01	Wine grape	cytosol	40.82	44.48
VIT_00s1395g00010.t01	Wine grape	cytosol	28.32	38.33
VIT_03s0038g00270.t01	Wine grape	cytosol	40.35	37.83
VIT_07s0005g06300.t01	Wine grape	cytosol	36.87	37.82
VIT_00s0665g00050.t01	Wine grape	cytosol	28.96	36.53
VIT_07s0129g00250.t01	Wine grape	cytosol	36.23	36.41
VIT_03s0091g00680.t01	Wine grape	cytosol	35.44	35.9
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	35.6	35.71
VIT_04s0008g06630.t01	Wine grape	cytosol	34.97	35.65
VIT_08s0056g00610.t01	Wine grape	cytosol	33.7	35.38
VIT_07s0104g01440.t01	Wine grape	plastid	35.28	35.34
VIT_06s0004g08230.t01	Wine grape	mitochondrion	31.49	34.79
VIT_07s0129g00380.t01	Wine grape	cytosol	33.39	33.18
VIT_00s0194g00080.t01	Wine grape	cytosol	30.06	32.04
CDY12056	Canola	plasma membrane	71.68	28.07
Os12t0613300-02	Rice	nucleus	1.27	2.69

Protein Annotations

EntrezGene:100241266	wikigene:100241266	Gene3D:3.30.710.10	MapMan:35.1	EMBL:AM451582	InterPro:BTB/POZ_dom
ProteinID:CAN72130	ProteinID:CAN72130.1	ProteinID:CBI30985	ProteinID:CBI30985.3	ncoils:Coil	UniProt:D7TKG3
EMBL:FN595992	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356
EntrezGene:LOC100241266	wikigene:LOC100241266	InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF12	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695
TIGR:TC54405	TIGR:TC62373	UniParc:UPI00015CB135	ArrayExpress:VIT_10s0003g04490	EnsemblPlantsGene:VIT_10s0003g04490	EnsemblPlants:VIT_10s0003g04490.t01
unigene:Vvi.8150	RefSeq:XP_002281182	RefSeq:XP_002281182.1	:	:	:

Description

No Description!

Coordinates

chr10:+:7850826..7855936

Molecular Weight (calculated)

69956.4 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.240

Length

632 amino acids

Sequence
(BLAST)

001: MACMKLGSKS DAFQRQGQAW FCTTGLPSDI VVEVGEMSFH LHKFPLLSRS GVMERLIAKA SKEGEEGCSI NLPDIAGGAK TFELVAKFCY GVKLELTASN
101: VVYLRCAAEH LEMTEEYAEG NLIMQTEVFL NQIVLKNWKD SLKALQSCDD VLPHAEELHI PKRCIESLAA KACTDPNLFG WPVMEHGGPM QSPGGSVLWN
201: GISTGARPKN SSSDWWYEDV STLSLSLYKR LVSVMESRGI KQEIIAGSLT FYAKKYLPGL NRRQVASESS TRLEPVALGA PPSEEDQKLL LEEIDRLLPM
301: QKGAISTKVL FGLLRTAMIL RASPPCISNL ERRIGMQLDQ ATLEDLLMPN FSYSMETLYN VECVQRILEH FLAMDQATGG ASPCSIDDGQ LMGSPSLTPI
401: TMVAKLIDGY LAEVAPDVNL KLPKFQSLAA SIPDYARPLD DGLYRAIDIY LKSHPWLSES DREQLCRLMD CQKLSLEACT HAAQNERLPL RIIVQVLFFE
501: QLQLRTSIAG CFLVSDNLEG SRQLRSGFAG SNEGGWATAV RENQVLKVGM DNMRLRVSEL EKECSNMRQE IEKLGRVKGS SAWGNVSKKF GFKLKSQMCS
601: AQEGSISQQN NGSGKLEKAK DGKHKKNSSK EE

Best Arabidopsis Sequence Match ( AT1G30440.1 )
(BLAST)

001: MACMKLGSKS DAFQRQGQAW FCTTGLPSDI VVEVGEMSFH LHKFPLLSRS GVMERRIAEA SKEGDDKCLI EISDLPGGDK TFELVAKFCY GVKLELTASN
101: VVYLRCAAEH LEMTEEHGEG NLISQTETFF NQVVLKSWKD SIKALHSCDE VLEYADELNI TKKCIESLAM RASTDPNLFG WPVVEHGGPM QSPGGSVLWN
201: GISTGARPKH TSSDWWYEDA SMLSFPLFKR LITVMESRGI REDIIAGSLT YYTRKHLPGL KRRRGGPESS GRFSTPLGSG NVLSEEEQKN LLEEIQELLR
301: MQKGLVPTKF FVDMLRIAKI LKASPDCIAN LEKRIGMQLD QAALEDLVMP SFSHTMETLY DVDSVQRILD HFLGTDQIMP GGVGSPCSSV DDGNLIGSPQ
401: SITPMTAVAK LIDGYLAEVA PDVNLKLPKF QALAASIPEY ARLLDDGLYR AIDIYLKHHP WLAETERENL CRLLDCQKLS LEACTHAAQN ERLPLRIIVQ
501: VLFFEQLQLR TSVAGCFLVS DNLDGGSRQL RSGGYVGGPN EGGGGGGGWA TAVRENQVLK VGMDSMRMRV CELEKECSNM RQEIEKLGKT TKGGGSASNG
601: VGSKTWENVS KKLGFGFKLK SHQMCSAQEG SVSKSNNENV KIEKLKDVKE RRGKHKKASS ISSER

Arabidopsis Description

BTB/POZ domain-containing protein At1g30440 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9Q9]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.