Factsheet for VIT_08s0056g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40661	Soybean	plastid	76.74	75.99
KRH00498	Soybean	cytosol, plastid	76.74	75.99
PGSC0003DMT400010359	Potato	cytosol	72.92	75.95
Solyc09g048980.2.1	Tomato	cytosol	66.11	75.38
GSMUA_Achr7P21950_001	Banana	plastid	63.46	67.85
AT3G08570.1	Thale cress	plastid	62.79	61.26
TraesCS5D01G146000.1	Wheat	plastid	63.29	60.48
CDX73937	Canola	plastid	58.64	60.45
TraesCS5A01G146300.1	Wheat	plastid	63.12	60.32
EES16593	Sorghum	plastid	64.45	60.25
TraesCS5B01G145100.1	Wheat	plastid	62.96	60.16
AT3G08660.1	Thale cress	plastid	58.14	60.14
CDY09561	Canola	cytosol	60.3	60.1
Bra001349.1-P	Field mustard	plastid	58.14	60.03
CDY00659	Canola	plastid	58.31	60.0
HORVU5Hr1G046340.2	Barley	plastid	62.79	59.72
CDY02305	Canola	cytosol	60.13	59.64
Bra032401.1-P	Field mustard	cytosol	59.97	59.47
Os11t0118500-00	Rice	plastid	62.62	58.63
Os12t0117600-01	Rice	plastid	62.96	58.22
Zm00001d023313_P001	Maize	plastid	61.3	56.08
HORVU0Hr1G011770.1	Barley	cytosol	42.36	56.04
VIT_07s0005g06300.t01	Wine grape	cytosol	52.66	51.46
VIT_07s0104g01440.t01	Wine grape	plastid	46.68	44.53
VIT_07s0129g00380.t01	Wine grape	cytosol	45.68	43.24
VIT_00s1395g00010.t01	Wine grape	cytosol	28.57	36.83
VIT_06s0004g08230.t01	Wine grape	mitochondrion	34.88	36.71
VIT_00s0665g00050.t01	Wine grape	cytosol	28.24	33.93
VIT_10s0003g04490.t01	Wine grape	cytosol	35.38	33.7
VIT_00s0207g00230.t01	Wine grape	cytosol	35.22	33.39
VIT_13s0019g04420.t01	Wine grape	cytosol	33.72	32.79
VIT_07s0129g00250.t01	Wine grape	cytosol	33.22	31.8
VIT_04s0008g06630.t01	Wine grape	cytosol	32.39	31.45
VIT_08s0040g01800.t01	Wine grape	cytosol	32.56	31.41
VIT_03s0038g00270.t01	Wine grape	cytosol	35.05	31.31
VIT_03s0091g00680.t01	Wine grape	cytosol	32.23	31.09
VIT_06s0061g01140.t01	Wine grape	cytosol	28.07	29.14
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	30.4	29.05
VIT_00s0194g00080.t01	Wine grape	cytosol	26.25	26.64

Protein Annotations

EntrezGene:100253624	wikigene:100253624	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ProteinID:CCB55963
ProteinID:CCB55963.1	ncoils:Coil	UniProt:F6HMT8	EMBL:FN595995	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356	EntrezGene:LOC100253624	wikigene:LOC100253624	InterPro:NPH3_dom
PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF5
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI0002108262	ArrayExpress:VIT_08s0056g00610	EnsemblPlantsGene:VIT_08s0056g00610
EnsemblPlants:VIT_08s0056g00610.t01	unigene:Vvi.19609	RefSeq:XP_002269960	RefSeq:XP_002269960.2	SEG:seg	:

Description

No Description!

Coordinates

chr8:+:892733..896238

Molecular Weight (calculated)

66971.2 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.142

Length

602 amino acids

Sequence
(BLAST)

001: MVSETPFIPS PTPKFCNSLA NRIFLDVAGD ITIVVDGESF LLHKFPLVSR SGKIRKMVAD VKDSSLSKLE FLNLPGGPRA FELAAKFCYG MNFEINTGNV
101: AQLRCAAEYL EMTEDYREEN LITRAETYLN EVVTQSLEKS VEVLSSCEML APMAEEVGIP DKCVDAIALN ACKEQLASGF SRLDCDDGCA ELKSGRLEWW
201: VEDLSVLKIE FYQRVIAAMG GAGVQPDSIV ASLMHYAQAS LKGIGKQQIW HPTRMKPSPG MVENSQCIIV ETLVSLLPAE KSSSIPLSFL FGMLRMAILV
301: GANVACRLEL ERRIGFRLEM VSLDDLLIPC VQTGDSLFDV DTVHRILVNF LQRIEEEENE EYGYESEALG SPSQGSVLKV GRLIDSYLAE IAPDPYLNLQ
401: KFMAMLEILP DYARVIDDGL YRAVDIYLKA HPMLTEHECK KLCKFIDCKK LSQEACNHAA QNDRLPVQMT VRVLYFEQLR LKSSLSGSSG DGFLSQRISS
501: GVPSAAMSPR DNYASLRREN RELKLEISRM RVRLSELEKE QLFMKQGMIE KSGNGKTFLT SISKGIGRIG IFSSPAGGKR KSGRKSRVTE GKTGRSRRHS
601: VS

Best Arabidopsis Sequence Match ( AT3G08570.1 )
(BLAST)

001: MGIISDNAQS HSSSSAPAPS IFSSSFATRI FSDVAGDITI VVDGESFLLH KFPLVARCGK IRKMVAEMKE SSSNLSHTEL RDFPGGSKTF ELAMKFCYGI
101: NFEITISNVV AIRCAAGYLE MTEDFKEENL IARTETYLEQ VAFRSLEKSV EVLCSCETLY PQDIAETAHI PDRCVEAIAV NACREQLVLG LSRLNRGTES
201: GELKRGDSPE WWIEDLSALR IDYYARVVSA MARTGLRSES IITSLMHYAQ ESLKGIRNCK ERTKLDSGTF ENEQRNVLEA IVSLFPNDNV PLSFLFGMLR
301: VGITINVAIS CRLELERRIA QQLETVSLDD LLIPVVRDGD SMYDVDTVHR ILVCFLKKIE EEEEYDEDCC YENETENLTG SMCHSSLLKV GRIMDAYLAE
401: IAPDPCLSLH KFMALIEILP DYARVMDDGL YRAIDMFLKG HPSLNEQECK SLCKFIDTQK LSQEACNHVA QNDRLPMQMV VRVLYSEQLR MKNVMSGESG
501: EGLLLSSQKH SSENPSRAVS PRDTYASLRR ENRELKLEIS RVRVRLTELE KEQILMKQGM MEKSGHGGTL LTSLSKGIGR ISIFGGGPTE GKLRNANRKS
601: KSRLERKTVR SRPESMF

Arabidopsis Description

BTB/POZ domain-containing protein At3g08570 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.