Factsheet for VIT_03s0038g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02330.t01
VIT_16s0013g01920.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	VIT_01s0026g02330.t01	AT2G02950.1	16777956
AT5G64330.1	VIT_16s0013g01920.t01	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083737	Potato	cytosol	82.34	84.22
PGSC0003DMT400006173	Potato	cytosol	84.27	84.02
Solyc10g047530.1.1	Tomato	cytosol	83.98	83.98
Solyc01g105680.2.1	Tomato	nucleus	83.23	83.86
KRH42114	Soybean	cytosol	82.79	83.04
KRH23618	Soybean	cytosol	60.68	80.83
GSMUA_Achr3P20380_001	Banana	cytosol	68.84	80.7
KRH10586	Soybean	cytosol	80.27	80.51
KRH21782	Soybean	cytosol	79.82	79.47
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	82.94	74.83
Bra024285.1-P	Field mustard	cytosol	78.64	73.1
CDX84515	Canola	cytosol	78.64	73.0
AT5G64330.1	Thale cress	cytosol	79.67	71.98
CDX81221	Canola	cytosol	77.15	71.23
CDY18715	Canola	cytosol	76.26	70.99
Bra037773.1-P	Field mustard	cytosol	77.0	70.42
HORVU6Hr1G015480.1	Barley	cytosol	69.58	64.16
TraesCS6A01G085100.1	Wheat	cytosol	69.44	64.02
TraesCSU01G114000.1	Wheat	cytosol	69.88	63.99
TraesCS6B01G117400.1	Wheat	cytosol	69.73	63.69
Zm00001d016898_P001	Maize	cytosol	69.58	62.62
Os02t0568200-00	Rice	cytosol	69.58	61.55
EES07014	Sorghum	nucleus	69.73	60.8
Zm00001d004440_P001	Maize	cytosol	52.23	55.17
GSMUA_Achr1P21440_001	Banana	cytosol	48.96	54.28
VIT_00s1395g00010.t01	Wine grape	cytosol	36.65	52.89
KXG25806	Sorghum	cytosol	50.0	51.53
VIT_00s0665g00050.t01	Wine grape	cytosol	37.98	51.1
VIT_10s0003g04490.t01	Wine grape	cytosol	37.83	40.35
VIT_07s0129g00250.t01	Wine grape	cytosol	37.54	40.22
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	36.05	38.57
VIT_03s0091g00680.t01	Wine grape	cytosol	34.72	37.5
VIT_13s0019g04420.t01	Wine grape	cytosol	34.12	37.16
VIT_08s0040g01800.t01	Wine grape	cytosol	34.12	36.86
VIT_00s0207g00230.t01	Wine grape	cytosol	34.12	36.22
VIT_04s0008g06630.t01	Wine grape	cytosol	32.94	35.81
VIT_08s0056g00610.t01	Wine grape	cytosol	31.31	35.05
VIT_07s0129g00380.t01	Wine grape	cytosol	32.94	34.91
VIT_07s0005g06300.t01	Wine grape	cytosol	31.75	34.74
VIT_06s0004g08230.t01	Wine grape	mitochondrion	29.38	34.62
VIT_06s0061g01140.t01	Wine grape	cytosol	29.67	34.48
VIT_00s0194g00080.t01	Wine grape	cytosol	30.27	34.4
VIT_07s0104g01440.t01	Wine grape	plastid	30.86	32.96

Protein Annotations

EntrezGene:100264249	wikigene:100264249	MapMan:19.2.2.8.2.2.1	Gene3D:3.30.710.10	EMBL:AM445889	InterPro:BTB/POZ_dom
ProteinID:CAN60915	ProteinID:CAN60915.1	ProteinID:CCB60905	ProteinID:CCB60905.1	ncoils:Coil	UniProt:F6I1T8
EMBL:FN596515	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	InterPro:IPR000210	InterPro:IPR027356
EntrezGene:LOC100264249	wikigene:LOC100264249	InterPro:NPH3-like	InterPro:NPH3_dom	PFAM:PF03000	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF6	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI00015CD371
ArrayExpress:VIT_03s0038g00270	EnsemblPlantsGene:VIT_03s0038g00270	EnsemblPlants:VIT_03s0038g00270.t01	unigene:Vvi.7217	RefSeq:XP_002269380	RefSeq:XP_002269380.1
RefSeq:XP_010645167.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3_random:+:233999..237205

Molecular Weight (calculated)

75723.5 Da

IEP (calculated)

8.088

GRAVY (calculated)

-0.423

Length

674 amino acids

Sequence
(BLAST)

001: MWESDSELVG GRDYGNGVLG SSKHGVKNDG FELRGQSWYV ATDIPSDFLV QIGDVSFHLH KYPLLSRSGK MNRIIYESHN ADLNKIAFDD LPGGPEAFEL
101: AAKFCYGIAV DLTAANISGL RCAAEYLEMT EDLEEGNLIF KTEAFLSYVV LSSWRDSIIV LKSCEKLSPW AENLQIVRRC SESIAWKACA NPKGIKWAYT
201: GKPLKVSSPK WNEMKDSSPS RGQQVPPDWW FEDVSILRID HFVRVITAIK VKGMRFELIG ASIMQYATKW LPGLIKEGMG TGMGDEGSNS SNGSSGSSSW
301: KGGLQMVVAG AKDDPPTVQA KDQRMIIESL ISIIPPQKDS VSCSFLLRLL RMANMLKVAP ALVTELEKRV GMQFEQATLA DLLIPSYNKS ETLYDVDLVQ
401: RLLEHFLVQE QTDSSSPSRQ PFPEKHLYEG TQRGNGSNAK MRVARLVDSY LTEVSRDRNL SLTKFQVLAE ALPESARTCD DGLYRAIDSY LKAHPTLSEH
501: ERKRLCRVMD CQKLSIDACM HAAQNERLPL RIVVQVLFSE QVKINNAIAN NTLKEAGESQ YQPMISNRKT LLEGTPQSFQ EGWTAAKKDI NTLKFELESM
601: KAKYLELQND MENLQRQFDK TSKQKQTSAW TSGWKKLSKL TKMTNIETHD IGSQLPTAAD QTRKTPRRWR NSIS

Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)

001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS

Arabidopsis Description

RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.