Factsheet for VIT_16s0013g01920.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g00270.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25160.1	VIT_03s0038g00270.t01	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048527	Potato	cytosol	65.31	63.37
Solyc03g093450.2.1	Tomato	nucleus	64.8	62.87
KRH56330	Soybean	cytosol, plasma membrane, plastid	63.27	62.08
KRH62634	Soybean	cytosol	63.9	61.85
CDY12184	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	40.94	60.68
PGSC0003DMT400018596	Potato	cytosol	62.76	58.09
Solyc05g051610.1.1	Tomato	cytosol	61.99	57.93
CDX92680	Canola	plastid	56.63	54.95
CDY34347	Canola	plastid	58.55	54.64
Bra013868.1-P	Field mustard	plastid	58.55	54.64
AT4G25160.1	Thale cress	plastid	58.16	54.61
Bra019185.1-P	Field mustard	plastid	56.12	54.46
CDY11059	Canola	plastid	56.25	54.31
Bra012943.1-P	Field mustard	cytosol	47.96	52.37
CDY16813	Canola	cytosol	54.34	51.33
CDY02135	Canola	cytosol	55.23	51.3
CDY02134	Canola	cytosol	50.26	51.1
Bra035920.1-P	Field mustard	cytosol	51.53	51.07
CDY16812	Canola	cytosol	51.91	51.07
CDY23059	Canola	cytosol	55.23	51.06
CDX87220	Canola	cytosol, peroxisome, plasma membrane	53.7	50.91
CDY42870	Canola	cytosol	51.28	50.76
GSMUA_Achr5P21060_001	Banana	cytosol	51.79	50.56
Bra029317.1-P	Field mustard	cytosol, nucleus, plastid	55.1	50.53
Bra029318.1-P	Field mustard	cytosol	51.02	50.51
CDY23058	Canola	cytosol, plastid	51.02	50.51
Bra012944.1-P	Field mustard	cytosol	52.17	50.49
AT5G61550.2	Thale cress	cytosol	55.23	50.35
CDY68766	Canola	cytosol, plastid	50.77	50.25
Os06t0140800-01	Rice	plasma membrane	51.4	50.0
KXG19255	Sorghum	cytosol	51.4	49.94
GSMUA_Achr11P...	Banana	cytosol	50.51	49.56
CDY42871	Canola	cytosol	51.91	49.51
AT5G61560.3	Thale cress	cytosol	50.89	48.96
AT5G51270.1	Thale cress	cytosol	50.26	48.94
CDX87221	Canola	cytosol	45.54	48.51
CDY00464	Canola	cytosol	47.96	48.45
CDY00462	Canola	mitochondrion, plasma membrane	39.29	48.35
CDX99935	Canola	cytosol	45.41	47.98
Bra015198.1-P	Field mustard	cytosol	46.43	47.83
Bra022543.1-P	Field mustard	plastid	48.21	47.79
CDY00461	Canola	cytosol	48.34	47.73
CDY16329	Canola	plastid	48.21	47.73
CDX91574	Canola	plastid	47.83	46.99
Zm00001d045397_P001	Maize	cytosol	44.9	46.5
TraesCS4A01G382900.1	Wheat	cytosol	48.47	46.06
Bra015196.1-P	Field mustard	cytosol	38.01	45.15
TraesCS7D01G079400.2	Wheat	cytosol	48.6	45.14
CDY61455	Canola	cytosol	46.05	44.51
TraesCS7A01G084400.4	Wheat	cytosol	45.66	42.72
TraesCS4A01G382700.4	Wheat	cytosol	45.41	42.63
HORVU7Hr1G018750.2	Barley	cytosol	43.24	41.19
HORVU7Hr1G018700.1	Barley	cytosol, plastid	35.59	38.06
VIT_11s0016g01830.t01	Wine grape	plastid	36.22	36.93
CDY03375	Canola	plastid	58.55	35.39
VIT_09s0002g01830.t01	Wine grape	cytosol	26.66	32.66
VIT_11s0065g00390.t01	Wine grape	cytosol	30.61	32.39
VIT_04s0008g01360.t01	Wine grape	cytosol, nucleus, plastid	29.72	31.83
VIT_04s0008g02910.t01	Wine grape	cytosol	32.14	31.62
VIT_09s0054g01060.t01	Wine grape	cytosol	30.36	30.55
VIT_15s0046g02480.t01	Wine grape	cytosol	31.76	28.26
VIT_06s0004g04580.t01	Wine grape	cytosol	29.21	27.39
VIT_16s0050g00690.t01	Wine grape	cytosol	29.08	27.14

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100242290	wikigene:100242290	MapMan:18.4.1.39.2	Gene3D:3.30.200.20	Gene3D:3.30.40.10
Gene3D:3.40.50.620	EMBL:AM454280	ProteinID:CAN78862	ProteinID:CAN78862.1	ProteinID:CBI38656	ProteinID:CBI38656.3
ncoils:Coil	UniProt:D7U7E2	EMBL:FN596738	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004842	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR014729	InterPro:Kinase-like_dom_sf
EntrezGene:LOC100242290	wikigene:LOC100242290	PFAM:PF04564	PFAM:PF07714	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF29	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
InterPro:Rossmann-like_a/b/a_fold	SMART:SM00220	SMART:SM00504	SUPFAM:SSF52402	SUPFAM:SSF56112	SUPFAM:SSF57850
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TIGR:TC57147	UniParc:UPI0001BE4DAB	InterPro:Ubox_domain	ArrayExpress:VIT_16s0013g01920
EnsemblPlantsGene:VIT_16s0013g01920	EnsemblPlants:VIT_16s0013g01920.t01	RefSeq:XP_002266973	RefSeq:XP_002266973.2	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr16:+:9058555..9074207

Molecular Weight (calculated)

87707.7 Da

IEP (calculated)

6.998

GRAVY (calculated)

-0.403

Length

784 amino acids

Sequence
(BLAST)

001: MEAKEIIEEK QELALALPLP STIAVAINGK KKSKYVVRWA LEKFVPEGLH MFKMLHVRPK ITSVPTPMGN SIPLSQVRDD VAAAYLEEMG WQTSEMLLPY
101: KTMFLHKKVQ VDVVVIESDD VAKAIAEEIA KSTIHKLVIG ASSSGMFSRK VKGQSLSLRI SECTPSFCTV YTVSKGQLSS VRPSDSDKNG SIKEDSSDAS
201: STTSSSSHTS SPHAGSAASY SHFHSPSLPM QRFQALSTIN RTLLHTRTGS IETNSSRHIG YAPSQVSSAR SFLTDDQSWI SDQASTSDAF TESSSGSQVN
301: INFELEKLRV ELRHVRGIYA MAQSENIDAS RKLNDLSKRR LEEADKLKEI KLKEEEAREL ARKEKEKYEA AKREAEYARE CAEKEALQRK EAEIKALHDV
401: KEKEKLENAL VGPVQSYQEF TWEEIVSATS SFSENLQIGK GAHGTVYRCN LHHTTAAVKV LHSKEGHRTK EFQQELDVLS KIRHPHLLLL LGACSDHGCL
501: VYEYMENGSL EERLLQKYNT APIPWFERYR IAWEVASTLV FLHNSKPKSI IHRDLKPANI LLDHNLVSKI GDVGLSTMLN LDSSICNINT GPVGTLCYID
601: PEYQRTGLVS PKSDVYAFGM VVLQLLTAKP AIALAHLVET AIQDDQLMKI LDPMAGQWPM KETKELALLG LSCLELRRRD RPDLKDEVLP ALERLKDAAD
701: RSRDSAPKVQ LAPPNHFVCP ILKDVMHDPC VAADGYTYDR RAIEKWVEEN DNSPMTNLAL PNKNLIPNYT LLSAIMEWKS QSNQ

Best Arabidopsis Sequence Match ( AT4G25160.1 )
(BLAST)

001: MSRSPDKLAL PPPPPPPPSR TVVVALSGSS KSKYVVTWAI EKFATEGNVG FKLLHIHPMI TSVPTPMGNA IPISEVRDDV VTAYRQEILW QSEEMLKPYT
101: KLFVRRKVAV EVLVIESDNV AAAIAEEVTR DSIDRIVIGG SSRSFFSRKA DICSVISALM PNFCTVYVVS KGKLSCVRPS DSDGNATIRE DGSERTNSSS
201: GSSGPTSDSS DVMSSAHDSQ SRPLSLPVRR MQHFPAIAGQ ASVPMETSSV GSDETRCMSL DAEEARDVSS INRSSTDTTS RWTPRRRDYE ERKEAMSSSS
301: SNREYGNFGT RFSWSGMGVD TTHSRASQQA SNMSDALSEQ SYTDNQVNLN FEVEKLRAEL RHVQEMYAVA QTETFDASRK LGELNQRRLE EAIKLEELKL
401: KEYEARELAE KEKQNFEKAR RDAESMRERA EREIAQRREA ERKSARDTKE KEKLEGTLGS PQLQYQHFAW EEIMAATSSF SEELKIGMGA YGAVYKCNLH
501: HTTAVVKVLQ SAENQLSKQF QQELEILSKI RHPHLVLLLG ACPEQGALVY EYMENGSLED RLFQVNNSPP LPWFERFRIA WEVAAALVFL HKSKPKPIIH
601: RDLKPANILL DHNFVSKVGD VGLSTMVQVD PLSTKFTIYK QTSPVGTLCY IDPEYQRTGR ISSKSDIYSF GMILLQLLTA KPAIALTHFV ESAMDSNDEF
701: LKILDQKAGN WPIEETRELA ALALCCTELR GKDRPDLKDQ ILPALENLKK VAEKARNSFS GVSTQPPTHF ICPLLKDVMN EPCVAADGYT YDRHAIEEWL
801: KEHNTSPMTD SPLHSKNLLP NYTLYTAIME WRSTR

Arabidopsis Description

PUB35U-box domain-containing protein 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW11]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.