CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81221
CDX84515
CDY18715

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25160.1	CDX81221	AT5G64330.1	16777956
AT4G25160.1	CDX84515	AT5G64330.1	16777956
AT4G25160.1	CDY18715	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11059	Canola	plastid	95.54	95.07
CDY12184	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	53.47	81.66
CDY34347	Canola	plastid	82.55	79.4
AT4G25160.1	Thale cress	plastid	79.83	77.25
CDY00462	Canola	mitochondrion, plasma membrane	45.54	57.77
CDY16329	Canola	plastid	55.94	57.07
CDX99935	Canola	cytosol	52.23	56.87
CDY00464	Canola	cytosol	54.58	56.83
CDX91574	Canola	plastid	55.94	56.64
VIT_16s0013g01920.t01	Wine grape	cytosol	54.95	56.63
CDY00461	Canola	cytosol	55.57	56.55
CDY02135	Canola	cytosol	56.81	54.38
CDY16812	Canola	cytosol	53.47	54.2
CDY23059	Canola	cytosol	56.56	53.89
CDY42871	Canola	cytosol	54.7	53.77
CDY16813	Canola	cytosol	55.2	53.73
CDX87220	Canola	cytosol, peroxisome, plasma membrane	54.46	53.2
CDY61455	Canola	cytosol	53.22	53.02
Solyc03g093450.2.1	Tomato	nucleus	52.35	52.35
PGSC0003DMT400048527	Potato	cytosol	51.73	51.73
CDY03375	Canola	plastid	82.3	51.27
KRH56330	Soybean	cytosol, plasma membrane, plastid	50.49	51.06
CDX87221	Canola	cytosol	46.29	50.82
Solyc05g051610.1.1	Tomato	cytosol	52.35	50.42
KRH62634	Soybean	cytosol	50.0	49.88
CDY70252	Canola	plasma membrane	16.83	49.82
PGSC0003DMT400018596	Potato	cytosol	52.1	49.7
CDY02134	Canola	cytosol	45.17	47.34
CDY42870	Canola	cytosol	45.92	46.84
CDY68766	Canola	cytosol, plastid	45.79	46.72
CDY23058	Canola	cytosol, plastid	45.54	46.46
KXG19255	Sorghum	cytosol	44.43	44.49
Os06t0140800-01	Rice	plasma membrane	44.06	44.17
CDY70022	Canola	cytosol	21.53	43.61
GSMUA_Achr5P21060_001	Banana	cytosol	43.07	43.34
GSMUA_Achr11P...	Banana	cytosol	42.7	43.18
Zm00001d045397_P001	Maize	cytosol	38.74	41.35
TraesCS4A01G382900.1	Wheat	cytosol	41.58	40.73
TraesCS7D01G079400.2	Wheat	cytosol	42.33	40.52
TraesCS7A01G084400.4	Wheat	cytosol	40.22	38.78
TraesCS4A01G382700.4	Wheat	cytosol	39.85	38.56
HORVU7Hr1G018750.2	Barley	cytosol	38.24	37.55
CDY67812	Canola	cytosol	26.24	35.27
CDY11888	Canola	cytosol, plastid	33.66	34.52
CDX88604	Canola	plastid	33.54	34.39
CDY54384	Canola	cytosol	32.43	34.25
CDY38258	Canola	cytosol	32.43	34.25
HORVU7Hr1G018700.1	Barley	cytosol, plastid	30.57	33.7
CDX93094	Canola	cytosol, nucleus, plastid	27.6	32.89
CDY12864	Canola	cytosol	33.17	32.84
CDY55241	Canola	cytosol	30.07	32.84
CDY24991	Canola	cytosol	28.59	32.81
CDY05538	Canola	cytosol	28.59	32.81
CDX69713	Canola	cytosol	28.34	32.81
CDX97160	Canola	cytosol	28.34	32.71
CDY39152	Canola	cytosol	33.04	32.25
CDX82677	Canola	cytosol	32.92	32.16
CDY46145	Canola	cytosol	30.82	32.13
CDY50937	Canola	cytosol	27.23	32.12
CDY34775	Canola	cytosol	31.44	31.87
CDY20308	Canola	cytosol	31.19	31.5
CDY33692	Canola	cytosol	28.09	31.35
CDX96762	Canola	cytosol	27.35	31.3
CDY64004	Canola	cytosol	27.97	31.22
CDX72299	Canola	cytosol	29.7	31.21
CDY13420	Canola	cytosol	29.58	31.08
CDY01401	Canola	plastid	32.3	31.0
CDY60522	Canola	cytosol	28.09	30.8
CDX81778	Canola	cytosol	27.85	30.7
CDY50990	Canola	cytosol	28.47	30.63
CDY59782	Canola	cytosol	27.85	30.49
CDX96431	Canola	nucleus	26.24	30.46
CDX83902	Canola	cytosol	26.98	30.19
CDY35116	Canola	nucleus	28.47	30.18
CDY40035	Canola	nucleus	28.34	30.05
CDY48312	Canola	cytosol, nucleus, plastid	26.98	29.78
CDY29801	Canola	nucleus	28.96	29.7
CDX72942	Canola	cytosol	25.99	29.62
CDY25396	Canola	nucleus	29.21	29.57
CDY53871	Canola	cytosol, nucleus, plastid	24.88	28.92
CDY49864	Canola	cytosol, nucleus, plastid	24.63	28.67
CDX96806	Canola	cytosol	27.23	28.65
CDY27350	Canola	plastid	27.85	28.3
CDY26235	Canola	cytosol, nucleus, plastid	26.73	28.12
CDY37074	Canola	plastid	27.6	27.2
CDX74774	Canola	nucleus, plastid	26.24	26.47
CDY18889	Canola	nucleus, plastid	26.11	26.24
CDX91180	Canola	cytosol	28.71	25.64
CDX82676	Canola	cytosol	26.61	24.52
CDY08105	Canola	cytosol	24.13	24.28
CDY05898	Canola	cytosol	23.76	24.06
CDX86996	Canola	nucleus	23.51	24.02
CDY37899	Canola	cytosol	23.02	23.08
CDX87421	Canola	cytosol	28.96	17.27
CDX88492	Canola	nucleus	28.71	17.13
CDX83940	Canola	cytosol	27.23	15.05

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.39.2	Gene3D:3.30.200.20	Gene3D:3.30.40.10	Gene3D:3.40.50.620	GO:A0A078DTK9
EnsemblPlants:CDX92680	ProteinID:CDX92680	ProteinID:CDX92680.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004842	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00154491001	InterPro:IPR000719	InterPro:IPR003613
InterPro:IPR013083	InterPro:IPR014729	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFAM:PF00582	PFAM:PF04564
ScanProsite:PS00108	PFscan:PS50011	PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF29	InterPro:Prot_kinase_dom
InterPro:Rossmann-like_a/b/a_fold	SMART:SM00220	SMART:SM00504	SUPFAM:SSF52402	SUPFAM:SSF56112	SUPFAM:SSF57850
InterPro:Ser/Thr_kinase_AS	UniPathway:UPA00143	UniParc:UPI0004EE9158	InterPro:Ubox_domain	InterPro:UspA	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaC07g39380D

Coordinates

chrLK031873:-:302688..306453

Molecular Weight (calculated)

90666.4 Da

IEP (calculated)

7.430

GRAVY (calculated)

-0.424

Length

808 amino acids

Sequence
(BLAST)

001: MEYLALPPPS PSPSSFRTVF VALSGSRKSK YVVTWALEKF GPEGNVGFKL LHIHPRITCV PTPMGNTIPI SEVREDVVTA YRQEILCQSE LVLTPFKKMF
101: EKRKVAVEVL VIESNNVAAA IAEEVIRNST ERLVIGSSSR RFFSRRVDLC SAISALMPNF CTVFVVSKGK LSSVRPGYLD ANASIRDDTS SSSSRPISES
201: TDGTSSAGDS SSSSISLPVR RLQHLTTAAR QASAQMETNS VGSEVTMCMS MDVSRTNKSS MDTKSPSTPG LRDNEERKKA MSSSSSNLEY GNATHSRSSQ
301: QASSMCDNIS EPSYTSNQLN LSFEVDKLKA ELRHIQEMYA VAQTEIFDAS RKLGEINQRR LEEARKLEEI KLKEYEAKEL AEKEKQNFEK AKRDVESMRE
401: KVEKEIAQRR EAERKAIRDS KEKEKLEGTL GTPQMQYQHF TWEEIVAATS SFSEEMKIGM GACGAVYKCN MHHTTAAVKV LHSPESRLSK EFQQELEILS
501: KIRHPHLVLL LGACPEQGAL VYEYMENGNL EDRLFQVNNT PPLPWFERIR IAWEVAAALV FLHKSKPKPI IHRDLKPANI LLDHNFVSKV GDVGLSTMVQ
601: VDHLSTKYTI YKQTSPVGTL SYMDPEYQRT GMISSKSDVY SFGIILLQLL TAKPPMALTH FVESAMDSDD GFLKILDRKA GNWPVEETRE LTALALCCTE
701: LRGKDRPDLR DQVLPALESI KRVGEKARHS ISGVPTQPPT HFLCPLLKDV MNEPCVAADG YTYDRHAIEK WLVEHDTSPM TDSPLNNKDL LPNYTLFTAI
801: MEWRSRLK

Best Arabidopsis Sequence Match ( AT4G25160.1 )
(BLAST)

001: MSRSPDKLAL PPPPPPPPSR TVVVALSGSS KSKYVVTWAI EKFATEGNVG FKLLHIHPMI TSVPTPMGNA IPISEVRDDV VTAYRQEILW QSEEMLKPYT
101: KLFVRRKVAV EVLVIESDNV AAAIAEEVTR DSIDRIVIGG SSRSFFSRKA DICSVISALM PNFCTVYVVS KGKLSCVRPS DSDGNATIRE DGSERTNSSS
201: GSSGPTSDSS DVMSSAHDSQ SRPLSLPVRR MQHFPAIAGQ ASVPMETSSV GSDETRCMSL DAEEARDVSS INRSSTDTTS RWTPRRRDYE ERKEAMSSSS
301: SNREYGNFGT RFSWSGMGVD TTHSRASQQA SNMSDALSEQ SYTDNQVNLN FEVEKLRAEL RHVQEMYAVA QTETFDASRK LGELNQRRLE EAIKLEELKL
401: KEYEARELAE KEKQNFEKAR RDAESMRERA EREIAQRREA ERKSARDTKE KEKLEGTLGS PQLQYQHFAW EEIMAATSSF SEELKIGMGA YGAVYKCNLH
501: HTTAVVKVLQ SAENQLSKQF QQELEILSKI RHPHLVLLLG ACPEQGALVY EYMENGSLED RLFQVNNSPP LPWFERFRIA WEVAAALVFL HKSKPKPIIH
601: RDLKPANILL DHNFVSKVGD VGLSTMVQVD PLSTKFTIYK QTSPVGTLCY IDPEYQRTGR ISSKSDIYSF GMILLQLLTA KPAIALTHFV ESAMDSNDEF
701: LKILDQKAGN WPIEETRELA ALALCCTELR GKDRPDLKDQ ILPALENLKK VAEKARNSFS GVSTQPPTHF ICPLLKDVMN EPCVAADGYT YDRHAIEEWL
801: KEHNTSPMTD SPLHSKNLLP NYTLYTAIME WRSTR

Arabidopsis Description

PUB35U-box domain-containing protein 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW11]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.