Factsheet for Solyc03g093450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g105680.2.1
Solyc10g047530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25160.1	Solyc01g105680.2.1	AT5G64330.1	16777956
AT4G25160.1	Solyc10g047530.1.1	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048527	Potato	cytosol	95.17	95.17
VIT_16s0013g01920.t01	Wine grape	cytosol	62.87	64.8
KRH62634	Soybean	cytosol	59.41	59.26
CDY12184	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	38.49	58.79
Solyc05g051610.1.1	Tomato	cytosol	60.64	58.4
KRH56330	Soybean	cytosol, plasma membrane, plastid	57.43	58.07
AT4G25160.1	Thale cress	plastid	54.58	52.81
CDX92680	Canola	plastid	52.35	52.35
Bra013868.1-P	Field mustard	plastid	54.08	52.02
CDY34347	Canola	plastid	54.08	52.02
Bra019185.1-P	Field mustard	plastid	51.73	51.73
CDY11059	Canola	plastid	51.36	51.11
AT5G51270.1	Thale cress	cytosol	49.88	50.06
CDX87220	Canola	cytosol, peroxisome, plasma membrane	50.74	49.58
Bra012943.1-P	Field mustard	cytosol	43.94	49.44
CDY16812	Canola	cytosol	48.39	49.06
Bra035920.1-P	Field mustard	cytosol	47.9	48.93
CDY02134	Canola	cytosol	46.66	48.9
CDY16813	Canola	cytosol	50.12	48.8
CDY02135	Canola	cytosol	50.87	48.7
CDY23059	Canola	cytosol	50.87	48.47
Bra029317.1-P	Field mustard	cytosol, nucleus, plastid	51.24	48.42
Os06t0140800-01	Rice	plasma membrane	48.27	48.39
AT5G61550.2	Thale cress	cytosol	51.49	48.37
Bra022543.1-P	Field mustard	plastid	47.28	48.29
CDY42870	Canola	cytosol	47.28	48.23
CDY16329	Canola	plastid	47.28	48.23
Bra012944.1-P	Field mustard	cytosol	48.27	48.15
CDY00464	Canola	cytosol	46.16	48.07
CDY23058	Canola	cytosol, plastid	46.91	47.85
Bra029318.1-P	Field mustard	cytosol	46.91	47.85
AT5G61560.3	Thale cress	cytosol	48.27	47.85
CDX91574	Canola	plastid	47.15	47.74
CDY00462	Canola	mitochondrion, plasma membrane	37.62	47.72
CDY68766	Canola	cytosol, plastid	46.66	47.6
CDY42871	Canola	cytosol	48.39	47.57
CDY00461	Canola	cytosol	46.66	47.48
CDX99935	Canola	cytosol	43.44	47.3
GSMUA_Achr5P21060_001	Banana	cytosol	46.91	47.2
Bra015198.1-P	Field mustard	cytosol	44.31	47.04
KXG19255	Sorghum	cytosol	46.78	46.84
GSMUA_Achr11P...	Banana	cytosol	45.92	46.43
CDX87221	Canola	cytosol	41.58	45.65
CDY61455	Canola	cytosol	45.17	45.01
TraesCS4A01G382900.1	Wheat	cytosol	45.3	44.36
Bra015196.1-P	Field mustard	cytosol	36.14	44.24
TraesCS7D01G079400.2	Wheat	cytosol	45.42	43.48
Zm00001d045397_P001	Maize	cytosol	40.47	43.2
TraesCS7A01G084400.4	Wheat	cytosol	42.7	41.17
TraesCS4A01G382700.4	Wheat	cytosol	42.33	40.96
HORVU7Hr1G018750.2	Barley	cytosol	40.59	39.85
Solyc12g008990.1.1	Tomato	cytosol	35.64	37.89
HORVU7Hr1G018700.1	Barley	cytosol, plastid	33.66	37.11
Solyc07g040940.2.1	Tomato	cytosol	34.16	37.0
Solyc12g096010.1.1	Tomato	cytosol	28.47	34.69
Solyc06g043250.2.1	Tomato	cytosol	28.84	33.92
CDY03375	Canola	plastid	54.33	33.85
Solyc08g069180.2.1	Tomato	cytosol	28.22	33.09
Solyc04g049400.2.1	Tomato	cytosol, mitochondrion, nucleus	31.44	32.44
Solyc08g006140.1.1	Tomato	cytosol	30.45	30.98
Solyc06g062820.2.1	Tomato	cytosol	29.33	29.12
Solyc11g065950.1.1	Tomato	plastid	28.96	27.37
Solyc01g094660.2.1	Tomato	cytosol	30.2	27.29
Solyc03g025450.2.1	Tomato	cytosol	24.26	24.9

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.39.2	Gene3D:3.30.200.20	Gene3D:3.30.40.10	Gene3D:3.40.50.620	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004842	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR003613
InterPro:IPR013083	InterPro:IPR014729	UniProt:K4BIM2	InterPro:Kinase-like_dom_sf	PFAM:PF04564	PFAM:PF07714
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF29
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00220	SMART:SM00504	SUPFAM:SSF52402
SUPFAM:SSF56112	SUPFAM:SSF57850	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc03g093450.2	EnsemblPlants:Solyc03g093450.2.1
UniParc:UPI00027690DA	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:+:54738489..54744591

Molecular Weight (calculated)

90591.0 Da

IEP (calculated)

6.360

GRAVY (calculated)

-0.365

Length

808 amino acids

Sequence
(BLAST)

001: MEEKDGEVIK VEGLTALPLL NSSTIAVAIN GKKKSKYVVK WALDKFVTEG KVCFKLLHVR PRITCVPTPM GSFIPISQVR EDVVAAFRKD VEWQTSENLL
101: PYKMLCTNRK VQVEVLQLES DDIVNAIAQE VTKLNIIKLV IGASSRSIFS RGQSLSSRIS DSTPKFCTIY AVSKGKLLSV RPSDPEINGS SSAGDSFTSC
201: SITSSTVHTS SSLTERSEPD SSSLYSHFRS PSLPMQRFRA LSHINQNFPH RRASSNVSVH HKSLSLDFGD GEDDVRSCPV GTYLTDRDDL ASSFRSLVSE
301: NYTTADDQAS ISGTLTDSSS RYETDINFEL EKLRAELRHT RGMYAVAQTE VLDASRKIND LHKRRLEEDV KLREICLKEE EVKELARKEN EKYEAAKREA
401: DYVNECAERE AAQRKEAELL ALREAKEKDK LENALTGQAH QYQEFTWEEI ISSTSSFDEN LKIGMGGYGT VYKCSLHHTT VAVKVLHSEG SHLTKQYQQE
501: LEILSKISHP HLLILLGVCP DRGCLVYEFM ENGSLEERLL RKNDTPPIPW FDRYRIAWEV ASALVFLHNS KPDPVIHRDL KPANILLDRN FVSKIGDVGL
601: STMINSDAAL STIYKDTGPV GTLCYIDPEY QRTGLISPTS DIYAFGMVLL QLLTAKAAMG LPHIVETAID KDNLTKVLDP EAGNWPLEET KKLAMLALKC
701: TELCRRDRPD LKDEILPALE TLKEVADKTR DSALTTKSPP PNYYLCPLLK DIMKDPCVAA DGFTYDRNAI ETWLKEKDIS PMTSLPLAHK NLLPNYALLS
801: AILDWKSR

Best Arabidopsis Sequence Match ( AT4G25160.1 )
(BLAST)

001: MSRSPDKLAL PPPPPPPPSR TVVVALSGSS KSKYVVTWAI EKFATEGNVG FKLLHIHPMI TSVPTPMGNA IPISEVRDDV VTAYRQEILW QSEEMLKPYT
101: KLFVRRKVAV EVLVIESDNV AAAIAEEVTR DSIDRIVIGG SSRSFFSRKA DICSVISALM PNFCTVYVVS KGKLSCVRPS DSDGNATIRE DGSERTNSSS
201: GSSGPTSDSS DVMSSAHDSQ SRPLSLPVRR MQHFPAIAGQ ASVPMETSSV GSDETRCMSL DAEEARDVSS INRSSTDTTS RWTPRRRDYE ERKEAMSSSS
301: SNREYGNFGT RFSWSGMGVD TTHSRASQQA SNMSDALSEQ SYTDNQVNLN FEVEKLRAEL RHVQEMYAVA QTETFDASRK LGELNQRRLE EAIKLEELKL
401: KEYEARELAE KEKQNFEKAR RDAESMRERA EREIAQRREA ERKSARDTKE KEKLEGTLGS PQLQYQHFAW EEIMAATSSF SEELKIGMGA YGAVYKCNLH
501: HTTAVVKVLQ SAENQLSKQF QQELEILSKI RHPHLVLLLG ACPEQGALVY EYMENGSLED RLFQVNNSPP LPWFERFRIA WEVAAALVFL HKSKPKPIIH
601: RDLKPANILL DHNFVSKVGD VGLSTMVQVD PLSTKFTIYK QTSPVGTLCY IDPEYQRTGR ISSKSDIYSF GMILLQLLTA KPAIALTHFV ESAMDSNDEF
701: LKILDQKAGN WPIEETRELA ALALCCTELR GKDRPDLKDQ ILPALENLKK VAEKARNSFS GVSTQPPTHF ICPLLKDVMN EPCVAADGYT YDRHAIEEWL
801: KEHNTSPMTD SPLHSKNLLP NYTLYTAIME WRSTR

Arabidopsis Description

PUB35U-box domain-containing protein 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW11]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.