Factsheet for GSMUA_Achr11P20980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P21440_001
GSMUA_Achr3P20380_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25160.1	GSMUA_Achr1P21440_001	AT5G64330.1	16777956
AT4G25160.1	GSMUA_Achr3P20380_001	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P21060_001	Banana	cytosol	70.84	70.49
VIT_16s0013g01920.t01	Wine grape	cytosol	49.56	50.51
KRH56330	Soybean	cytosol, plasma membrane, plastid	49.06	49.06
Os06t0140800-01	Rice	plasma membrane	49.19	48.76
KXG19255	Sorghum	cytosol	48.94	48.45
KRH62634	Soybean	cytosol	49.06	48.4
PGSC0003DMT400048527	Potato	cytosol	46.56	46.04
Solyc03g093450.2.1	Tomato	nucleus	46.43	45.92
CDY12184	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	29.91	45.18
Zm00001d045397_P001	Maize	cytosol	42.43	44.78
TraesCS4A01G382900.1	Wheat	cytosol	46.06	44.61
Solyc05g051610.1.1	Tomato	cytosol	46.56	44.34
PGSC0003DMT400018596	Potato	cytosol	46.56	43.92
Bra012943.1-P	Field mustard	cytosol	39.05	43.45
TraesCS7D01G079400.2	Wheat	cytosol	45.81	43.36
CDY42870	Canola	cytosol	42.93	43.31
CDY02134	Canola	cytosol	41.68	43.19
CDY68766	Canola	cytosol, plastid	42.8	43.18
Bra029318.1-P	Field mustard	cytosol	42.8	43.18
Bra019185.1-P	Field mustard	plastid	43.3	42.82
CDY23058	Canola	cytosol, plastid	42.43	42.8
CDY11059	Canola	plastid	43.43	42.73
CDX92680	Canola	plastid	43.18	42.7
Bra022543.1-P	Field mustard	plastid	42.18	42.6
CDY16329	Canola	plastid	42.18	42.55
AT5G51270.1	Thale cress	cytosol	42.8	42.48
AT5G61560.3	Thale cress	cytosol	43.18	42.33
CDY34347	Canola	plastid	44.18	42.02
AT4G25160.1	Thale cress	plastid	43.8	41.92
Bra013868.1-P	Field mustard	plastid	44.06	41.9
CDX87220	Canola	cytosol, peroxisome, plasma membrane	43.18	41.72
CDX91574	Canola	plastid	41.55	41.6
Bra012944.1-P	Field mustard	cytosol	42.05	41.48
CDY02135	Canola	cytosol	43.8	41.47
CDX99935	Canola	cytosol	38.42	41.37
CDY16813	Canola	cytosol	42.93	41.33
CDY00464	Canola	cytosol	40.05	41.24
TraesCS7A01G084400.4	Wheat	cytosol	43.18	41.17
CDY23059	Canola	cytosol	43.68	41.16
TraesCS4A01G382700.4	Wheat	cytosol	42.93	41.08
Bra015198.1-P	Field mustard	cytosol	39.05	41.0
Bra035920.1-P	Field mustard	cytosol	40.43	40.83
CDY00461	Canola	cytosol	40.55	40.81
CDY16812	Canola	cytosol	40.68	40.78
CDY00462	Canola	mitochondrion, plasma membrane	32.42	40.66
Bra029317.1-P	Field mustard	cytosol, nucleus, plastid	43.3	40.47
HORVU7Hr1G018750.2	Barley	cytosol	41.68	40.46
AT5G61550.2	Thale cress	cytosol	43.43	40.35
CDY42871	Canola	cytosol	40.68	39.54
CDX87221	Canola	cytosol	34.42	37.36
CDY61455	Canola	cytosol	37.92	37.36
Bra015196.1-P	Field mustard	cytosol	30.29	36.67
HORVU7Hr1G018700.1	Barley	cytosol, plastid	32.67	35.61
GSMUA_Achr7P09650_001	Banana	cytosol	30.91	33.61
GSMUA_Achr2P00730_001	Banana	cytosol	26.66	33.28
GSMUA_Achr9P23090_001	Banana	mitochondrion	21.78	32.71
GSMUA_Achr1P23730_001	Banana	cytosol	26.91	32.23
GSMUA_Achr4P05730_001	Banana	cytosol	27.16	31.54
GSMUA_Achr4P04620_001	Banana	cytosol, nucleus, plastid	28.16	31.03
GSMUA_Achr4P11550_001	Banana	cytosol, mitochondrion	28.91	30.72
GSMUA_Achr9P14140_001	Banana	cytosol	27.66	30.69
GSMUA_Achr5P12380_001	Banana	cytosol	29.54	29.5
GSMUA_Achr5P05020_001	Banana	cytosol	29.04	29.11
GSMUA_Achr8P05660_001	Banana	cytosol	29.54	28.89
GSMUA_Achr2P15770_001	Banana	cytosol	26.28	28.53
GSMUA_AchrUn_...	Banana	cytosol	27.66	28.44
GSMUA_Achr7P04450_001	Banana	cytosol	27.28	27.88
CDY03375	Canola	plastid	43.93	27.06
GSMUA_AchrUn_...	Banana	cytosol	27.03	27.0
GSMUA_Achr8P11510_001	Banana	cytosol	27.53	25.88
GSMUA_Achr1P17400_001	Banana	cytosol	22.9	24.7
GSMUA_Achr10P...	Banana	cytosol	27.03	24.66
GSMUA_Achr4P20700_001	Banana	cytosol	25.91	18.17

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.39.2	Gene3D:3.30.200.20	Gene3D:3.30.40.10	Gene3D:3.40.50.620	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004842	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr11G20980_001
EnsemblPlants:GSMUA_Achr11P20980_001	EnsemblPlants:GSMUA_Achr11T20980_001	InterPro:IPR000719	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR014729
InterPro:Kinase-like_dom_sf	UniProt:M0RU28	PFAM:PF00582	PFAM:PF04564	PFAM:PF07714	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF29	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00220	SMART:SM00504	SUPFAM:SSF52402	SUPFAM:SSF56112
SUPFAM:SSF57850	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000295B16B	InterPro:Ubox_domain	InterPro:UspA
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Putative U-box domain-containing protein 35 [Source:GMGC_GENE;Acc:GSMUA_Achr11G20980_001]

Coordinates

chr11:-:21780963..21789676

Molecular Weight (calculated)

89469.4 Da

IEP (calculated)

5.931

GRAVY (calculated)

-0.384

Length

799 amino acids

Sequence
(BLAST)

001: MCNNQIVEKE EGKDFSIGEM EEGNRLVHDS LSTVALAIDG TKKSKYVIQW ALNKFRDEGR VMFKLLHVRP RIKMIPTPMG NLPVNQVRED VASAYRKEQG
101: WRTQTMLRPY KDMCLQNQVQ LIETKVVVLE ADDVAEAIAK EVTENSISKL VIGASSRNAL MRKFKGSNLP TRIAECKPSF CTVYVVSKGK LSSICASVSE
201: MDETASTSIT DDSAKEENDS SGLSSSFSSN SRNPISGSGA EVKSSFRLTC LPQLQQEAFI SKDYGRSNSV DTLLTGNMSL LEDSRISSSY VSESQYSNSI
301: ASLRSYQTVK SWNFTTSSTS HSSKEYSPSG NEFVYSQSST MQGDIDLELE KLRTQLRHPM GLFKFAPNEL HSASQQLHDI HEHDSEEIFK LHETRSRLEM
401: TSKIAQLENE RHEDSEKQTP ERELACSSEP YMKYNWEEIV DATLSFSDAL KIGVGANGTV YKGIFHHTVA AVKVLHSSEG SNTRQFNQEL EVLSRVCHPH
501: VLLLLGACPD KGCIVYEYME NGSLEDRLQC KNDTLPLPWF HRFRIAWEVA SALIFLHNSR PEPIIHRDLK PANILLDTNF VSKIGDAGLS TLIPTSNVPL
601: STMYKDTAPV GTFFYMDPEY QRTGLVSAKS DTYALGMVIL ELLTAKSPMG LAFAIETALE TDCLMDILDS KAGRWPEAGA KELANLGLRC LEMRRKDRPE
701: LKDQVLPVLE RLKDTMAQAH VSLRDPSVPP KHFICPIQKT VMDDPCIAAD GYTYDRYAIG AWLSWNENSP MTNLPLPNKE LIPDNSLLSA IIDWKARTQ

Best Arabidopsis Sequence Match ( AT4G25160.1 )
(BLAST)

001: MSRSPDKLAL PPPPPPPPSR TVVVALSGSS KSKYVVTWAI EKFATEGNVG FKLLHIHPMI TSVPTPMGNA IPISEVRDDV VTAYRQEILW QSEEMLKPYT
101: KLFVRRKVAV EVLVIESDNV AAAIAEEVTR DSIDRIVIGG SSRSFFSRKA DICSVISALM PNFCTVYVVS KGKLSCVRPS DSDGNATIRE DGSERTNSSS
201: GSSGPTSDSS DVMSSAHDSQ SRPLSLPVRR MQHFPAIAGQ ASVPMETSSV GSDETRCMSL DAEEARDVSS INRSSTDTTS RWTPRRRDYE ERKEAMSSSS
301: SNREYGNFGT RFSWSGMGVD TTHSRASQQA SNMSDALSEQ SYTDNQVNLN FEVEKLRAEL RHVQEMYAVA QTETFDASRK LGELNQRRLE EAIKLEELKL
401: KEYEARELAE KEKQNFEKAR RDAESMRERA EREIAQRREA ERKSARDTKE KEKLEGTLGS PQLQYQHFAW EEIMAATSSF SEELKIGMGA YGAVYKCNLH
501: HTTAVVKVLQ SAENQLSKQF QQELEILSKI RHPHLVLLLG ACPEQGALVY EYMENGSLED RLFQVNNSPP LPWFERFRIA WEVAAALVFL HKSKPKPIIH
601: RDLKPANILL DHNFVSKVGD VGLSTMVQVD PLSTKFTIYK QTSPVGTLCY IDPEYQRTGR ISSKSDIYSF GMILLQLLTA KPAIALTHFV ESAMDSNDEF
701: LKILDQKAGN WPIEETRELA ALALCCTELR GKDRPDLKDQ ILPALENLKK VAEKARNSFS GVSTQPPTHF ICPLLKDVMN EPCVAADGYT YDRHAIEEWL
801: KEHNTSPMTD SPLHSKNLLP NYTLYTAIME WRSTR

Arabidopsis Description

PUB35U-box domain-containing protein 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW11]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.