CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81221
CDX84515
CDY18715

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25160.1	CDX81221	AT5G64330.1	16777956
AT4G25160.1	CDX84515	AT5G64330.1	16777956
AT4G25160.1	CDY18715	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34347	Canola	plastid	92.82	58.45
AT4G25160.1	Thale cress	plastid	85.26	54.01
CDY11059	Canola	plastid	82.23	53.57
CDX92680	Canola	plastid	81.66	53.47
CDY00462	Canola	mitochondrion, plasma membrane	62.19	51.65
CDY70252	Canola	plasma membrane	25.33	49.08
CDY70022	Canola	cytosol	32.89	43.61
CDY16329	Canola	plastid	64.84	43.31
CDY00461	Canola	cytosol	64.84	43.2
CDX91574	Canola	plastid	64.84	42.98
CDY00464	Canola	cytosol	62.76	42.78
CDX99935	Canola	cytosol	59.17	42.18
VIT_16s0013g01920.t01	Wine grape	cytosol	60.68	40.94
CDY61455	Canola	cytosol	61.25	39.95
CDY03375	Canola	plastid	96.22	39.24
CDY16813	Canola	cytosol	61.06	38.92
CDY02135	Canola	cytosol	61.81	38.74
CDY16812	Canola	cytosol	58.22	38.64
PGSC0003DMT400048527	Potato	cytosol	58.98	38.61
CDX87220	Canola	cytosol, peroxisome, plasma membrane	60.3	38.57
CDY23059	Canola	cytosol	61.81	38.56
Solyc03g093450.2.1	Tomato	nucleus	58.79	38.49
CDY42871	Canola	cytosol	58.98	37.96
Solyc05g051610.1.1	Tomato	cytosol	59.36	37.43
KRH56330	Soybean	cytosol, plasma membrane, plastid	56.33	37.3
PGSC0003DMT400018596	Potato	cytosol	59.17	36.95
CDY02134	Canola	cytosol	53.5	36.71
KRH62634	Soybean	cytosol	55.95	36.54
CDY42870	Canola	cytosol	53.88	35.98
CDY68766	Canola	cytosol, plastid	53.5	35.73
CDY23058	Canola	cytosol, plastid	53.12	35.48
CDX87221	Canola	cytosol	49.34	35.46
Zm00001d045397_P001	Maize	cytosol	46.88	32.76
GSMUA_Achr5P21060_001	Banana	cytosol	48.02	31.63
Os06t0140800-01	Rice	plasma membrane	48.02	31.51
KXG19255	Sorghum	cytosol	47.64	31.23
CDY67812	Canola	cytosol	35.16	30.95
GSMUA_Achr11P...	Banana	cytosol	45.18	29.91
HORVU7Hr1G018750.2	Barley	cytosol	45.75	29.4
TraesCS4A01G382700.4	Wheat	cytosol	45.94	29.1
TraesCS7A01G084400.4	Wheat	cytosol	45.75	28.88
TraesCS4A01G382900.1	Wheat	cytosol	44.99	28.85
TraesCS7D01G079400.2	Wheat	cytosol	45.94	28.79
CDY38258	Canola	cytosol	39.32	27.19
CDY54384	Canola	cytosol	39.13	27.06
CDY55241	Canola	cytosol	37.81	27.03
CDX93094	Canola	cytosol, nucleus, plastid	34.59	26.99
CDX69713	Canola	cytosol	35.54	26.93
CDY11888	Canola	cytosol, plastid	40.08	26.9
CDX97160	Canola	cytosol	35.54	26.86
CDX88604	Canola	plastid	39.89	26.78
CDY39152	Canola	cytosol	40.83	26.09
CDX82677	Canola	cytosol	40.64	26.0
CDY50937	Canola	cytosol	33.65	25.99
CDY12864	Canola	cytosol	40.08	25.98
CDY05538	Canola	cytosol	34.4	25.85
CDY24991	Canola	cytosol	34.4	25.85
CDX96762	Canola	cytosol	34.22	25.64
CDX72299	Canola	cytosol	37.24	25.62
CDY13420	Canola	cytosol	37.24	25.62
CDY46145	Canola	cytosol	37.43	25.55
CDX96431	Canola	nucleus	33.46	25.43
CDY34775	Canola	cytosol	38.0	25.22
CDY01401	Canola	plastid	40.08	25.18
CDY64004	Canola	cytosol	34.4	25.14
CDY33692	Canola	cytosol	34.22	25.0
CDX72942	Canola	cytosol	33.46	24.96
CDY20308	Canola	cytosol	37.62	24.88
CDX83902	Canola	cytosol	33.84	24.79
CDY48312	Canola	cytosol, nucleus, plastid	34.03	24.59
CDY60522	Canola	cytosol	34.22	24.56
CDX82676	Canola	cytosol	40.08	24.17
CDY59782	Canola	cytosol	33.65	24.12
CDY35116	Canola	nucleus	34.59	24.02
CDY50990	Canola	cytosol	34.03	23.97
CDY40035	Canola	nucleus	34.4	23.88
CDY53871	Canola	cytosol, nucleus, plastid	31.19	23.74
CDX81778	Canola	cytosol	32.89	23.74
CDY49864	Canola	cytosol, nucleus, plastid	31.0	23.63
CDY26235	Canola	cytosol, nucleus, plastid	33.84	23.31
CDX96806	Canola	cytosol	33.46	23.05
CDY29801	Canola	nucleus	34.03	22.84
CDY27350	Canola	plastid	34.22	22.77
CDY25396	Canola	nucleus	34.22	22.68
CDY37074	Canola	plastid	34.22	22.07
CDX91180	Canola	cytosol	36.67	21.44
CDX74774	Canola	nucleus, plastid	31.57	20.85
CDY18889	Canola	nucleus, plastid	31.57	20.77
HORVU7Hr1G018700.1	Barley	cytosol, plastid	27.98	20.19
CDY08105	Canola	cytosol	30.25	19.93
CDY05898	Canola	cytosol	29.68	19.67
CDX86996	Canola	nucleus	28.54	19.09
CDY37899	Canola	cytosol	28.54	18.73
CDX87421	Canola	cytosol	35.16	13.73
CDX88492	Canola	nucleus	34.97	13.66
CDX83940	Canola	cytosol	33.46	12.11

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.39.2	Gene3D:3.30.200.20	Gene3D:3.30.40.10	GO:A0A078FGP7	UniProt:A0A078FGP7
EnsemblPlants:CDY12184	ProteinID:CDY12184	ProteinID:CDY12184.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004842	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00061194001	InterPro:IPR000719	InterPro:IPR003613	InterPro:IPR013083
InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFAM:PF04564	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF29	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SMART:SM00504	SUPFAM:SSF56112	SUPFAM:SSF57850	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniPathway:UPA00143
UniParc:UPI0004EDCED9	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

BnaC04g12140DBnaC04g12140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGP7]

Coordinates

chrLK032018:-:217411..220186

Molecular Weight (calculated)

60478.8 Da

IEP (calculated)

6.564

GRAVY (calculated)

-0.400

Length

529 amino acids

Sequence
(BLAST)

001: MDAGEARMTP GACLWMHRKL KMFLVSIAAA LILHHVGLHV NLSFEVEKLR AELRHVQEMY TAAQTETFDA SRKLAELNQR RLEEAIKLEE LKLKEYEARE
101: LAEKEKQNFE KARRDAESMR ERAEREIAQR REAERKAARD AKEKEKLEDT LGSPRLQYQH FTWEEIVAAT SSFSEELKIG MGAYGSVYKC NMHHTTAAVK
201: VLHTAESGLS KQFQQELEIL SKIRHPHLVL LLGACPEQGA LVYEYMENGS LEDRLFQANN SPPLPWFERV RIAWEVAAAL IFLHKSKPKP IIHCDLKPAN
301: ILLDHNFVSK VEDVGLSTMV QVDPLSTKFT IYKQTSPVGT LSYMDPEYQR TGMISSKSDV YSFGMIVLQL LTAKPPMALT HLVESAMDSN DEFLKILDQK
401: AGNWPVEETR ELTSLALCCT ELRGKDRLDL RDQILPALES LKKVAEKARN SISSVPTQPP FHFLCPLLKD VMNEPCVAAD GYTYDRRAIE EWFEEHNTSP
501: MTDSPLLSKN LLPNYTLYTA IMEWRSRLK

Best Arabidopsis Sequence Match ( AT4G25160.1 )
(BLAST)

001: MSRSPDKLAL PPPPPPPPSR TVVVALSGSS KSKYVVTWAI EKFATEGNVG FKLLHIHPMI TSVPTPMGNA IPISEVRDDV VTAYRQEILW QSEEMLKPYT
101: KLFVRRKVAV EVLVIESDNV AAAIAEEVTR DSIDRIVIGG SSRSFFSRKA DICSVISALM PNFCTVYVVS KGKLSCVRPS DSDGNATIRE DGSERTNSSS
201: GSSGPTSDSS DVMSSAHDSQ SRPLSLPVRR MQHFPAIAGQ ASVPMETSSV GSDETRCMSL DAEEARDVSS INRSSTDTTS RWTPRRRDYE ERKEAMSSSS
301: SNREYGNFGT RFSWSGMGVD TTHSRASQQA SNMSDALSEQ SYTDNQVNLN FEVEKLRAEL RHVQEMYAVA QTETFDASRK LGELNQRRLE EAIKLEELKL
401: KEYEARELAE KEKQNFEKAR RDAESMRERA EREIAQRREA ERKSARDTKE KEKLEGTLGS PQLQYQHFAW EEIMAATSSF SEELKIGMGA YGAVYKCNLH
501: HTTAVVKVLQ SAENQLSKQF QQELEILSKI RHPHLVLLLG ACPEQGALVY EYMENGSLED RLFQVNNSPP LPWFERFRIA WEVAAALVFL HKSKPKPIIH
601: RDLKPANILL DHNFVSKVGD VGLSTMVQVD PLSTKFTIYK QTSPVGTLCY IDPEYQRTGR ISSKSDIYSF GMILLQLLTA KPAIALTHFV ESAMDSNDEF
701: LKILDQKAGN WPIEETRELA ALALCCTELR GKDRPDLKDQ ILPALENLKK VAEKARNSFS GVSTQPPTHF ICPLLKDVMN EPCVAADGYT YDRHAIEEWL
801: KEHNTSPMTD SPLHSKNLLP NYTLYTAIME WRSTR

Arabidopsis Description

PUB35U-box domain-containing protein 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW11]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.