Factsheet for GSMUA_Achr5P21060_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P21440_001
GSMUA_Achr3P20380_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25160.1	GSMUA_Achr1P21440_001	AT5G64330.1	16777956
AT4G25160.1	GSMUA_Achr3P20380_001	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	70.49	70.84
VIT_16s0013g01920.t01	Wine grape	cytosol	50.56	51.79
KRH56330	Soybean	cytosol, plasma membrane, plastid	48.57	48.81
Os06t0140800-01	Rice	plasma membrane	48.57	48.39
KXG19255	Sorghum	cytosol	48.44	48.2
KRH62634	Soybean	cytosol	48.57	48.15
CDY12184	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	31.63	48.02
PGSC0003DMT400048527	Potato	cytosol	47.7	47.4
Solyc03g093450.2.1	Tomato	nucleus	47.2	46.91
Solyc05g051610.1.1	Tomato	cytosol	47.95	45.89
Zm00001d045397_P001	Maize	cytosol	42.84	45.44
PGSC0003DMT400018596	Potato	cytosol	47.7	45.22
Bra012943.1-P	Field mustard	cytosol	39.98	44.71
CDY02134	Canola	cytosol	42.22	43.97
CDY42870	Canola	cytosol	43.09	43.69
TraesCS4A01G382900.1	Wheat	cytosol	44.83	43.64
Bra029318.1-P	Field mustard	cytosol	42.96	43.56
CDY68766	Canola	cytosol, plastid	42.71	43.31
CDX92680	Canola	plastid	43.34	43.07
Bra019185.1-P	Field mustard	plastid	43.34	43.07
AT5G61560.3	Thale cress	cytosol	43.71	43.07
CDY23058	Canola	cytosol, plastid	42.47	43.06
CDY11059	Canola	plastid	43.46	42.98
CDY34347	Canola	plastid	44.46	42.5
Bra013868.1-P	Field mustard	plastid	44.33	42.38
TraesCS7D01G079400.2	Wheat	cytosol	44.46	42.3
AT4G25160.1	Thale cress	plastid	43.84	42.16
AT5G51270.1	Thale cress	cytosol	41.97	41.86
Bra035920.1-P	Field mustard	cytosol	41.1	41.72
CDY16812	Canola	cytosol	41.34	41.66
Bra012944.1-P	Field mustard	cytosol	41.97	41.6
CDX87220	Canola	cytosol, peroxisome, plasma membrane	42.84	41.6
CDY16329	Canola	plastid	40.85	41.41
CDY02135	Canola	cytosol	43.46	41.35
Bra022543.1-P	Field mustard	plastid	40.72	41.34
CDY16813	Canola	cytosol	42.71	41.33
CDX99935	Canola	cytosol	38.11	41.24
CDY23059	Canola	cytosol	43.34	41.04
Bra015198.1-P	Field mustard	cytosol	38.85	41.0
CDX91574	Canola	plastid	40.47	40.73
CDY00461	Canola	cytosol	40.22	40.68
CDY00462	Canola	mitochondrion, plasma membrane	32.25	40.66
TraesCS7A01G084400.4	Wheat	cytosol	42.34	40.57
Bra029317.1-P	Field mustard	cytosol, nucleus, plastid	43.09	40.47
CDY00464	Canola	cytosol	39.1	40.46
TraesCS4A01G382700.4	Wheat	cytosol	41.97	40.36
AT5G61550.2	Thale cress	cytosol	43.21	40.35
HORVU7Hr1G018750.2	Barley	cytosol	40.72	39.73
CDY42871	Canola	cytosol	40.22	39.29
CDX87221	Canola	cytosol	35.24	38.45
CDY61455	Canola	cytosol	38.11	37.73
GSMUA_Achr9P23090_001	Banana	mitochondrion	23.91	36.09
Bra015196.1-P	Field mustard	cytosol	29.02	35.3
GSMUA_Achr2P00730_001	Banana	cytosol	28.02	35.16
HORVU7Hr1G018700.1	Barley	cytosol, plastid	31.76	34.79
GSMUA_Achr7P09650_001	Banana	cytosol	31.76	34.69
GSMUA_Achr4P05730_001	Banana	cytosol	29.39	34.3
GSMUA_Achr1P23730_001	Banana	cytosol	27.52	33.13
GSMUA_Achr4P04620_001	Banana	cytosol, nucleus, plastid	29.02	32.14
GSMUA_Achr9P14140_001	Banana	cytosol	28.14	31.39
GSMUA_Achr4P11550_001	Banana	cytosol, mitochondrion	29.39	31.38
GSMUA_Achr2P15770_001	Banana	cytosol	28.14	30.71
GSMUA_AchrUn_...	Banana	cytosol	29.51	30.5
GSMUA_Achr8P05660_001	Banana	cytosol	30.39	29.87
GSMUA_Achr5P05020_001	Banana	cytosol	29.51	29.74
GSMUA_Achr5P12380_001	Banana	cytosol	28.77	28.88
GSMUA_Achr7P04450_001	Banana	cytosol	26.77	27.49
CDY03375	Canola	plastid	44.21	27.37
GSMUA_AchrUn_...	Banana	cytosol	27.02	27.12
GSMUA_Achr8P11510_001	Banana	cytosol	26.53	25.06
GSMUA_Achr1P17400_001	Banana	cytosol	22.79	24.7
GSMUA_Achr10P...	Banana	cytosol	26.03	23.86
GSMUA_Achr4P20700_001	Banana	cytosol	27.4	19.32

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.39.2	Gene3D:3.30.200.20	Gene3D:3.30.40.10	Gene3D:3.40.50.620	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004842	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G21060_001
EnsemblPlants:GSMUA_Achr5P21060_001	EnsemblPlants:GSMUA_Achr5T21060_001	InterPro:IPR000719	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR014729
InterPro:Kinase-like_dom_sf	UniProt:M0T0D5	PFAM:PF00069	PFAM:PF00582	PFAM:PF04564	ScanProsite:PS00108
PFscan:PS50011	PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF29	InterPro:Prot_kinase_dom	InterPro:Rossmann-like_a/b/a_fold
SMART:SM00220	SMART:SM00504	SUPFAM:SSF52402	SUPFAM:SSF56112	SUPFAM:SSF57850	InterPro:Ser/Thr_kinase_AS
UniParc:UPI000296BDFB	InterPro:Ubox_domain	InterPro:UspA	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Putative U-box domain-containing protein 35 [Source:GMGC_GENE;Acc:GSMUA_Achr5G21060_001]

Coordinates

chr5:-:22947743..22958748

Molecular Weight (calculated)

90015.0 Da

IEP (calculated)

5.408

GRAVY (calculated)

-0.324

Length

803 amino acids

Sequence
(BLAST)

001: MEKGDRLLHN SVTTVALAIN GTSNSRHIVQ WALNKFISGG GVMFKLLHVR SRIKMVPSPI GNLPVEQVQD DVASAYKKEE EWKTEVMLRP YKNMCSAKQI
101: ETEVVILEAD DVAEAISKEV TENSISMLVI GGSSKNAIIR KLWGGNLSSR IAECTPSFCT VYVVSRGKLS SVRASAFGTD EIAPTSVTKD SIKEENDSSA
201: VFYSSSNNSP ILKSEMIDLD TEVNFPSQLP CLPQLQQKLA YASKDYESSN SANSLLTRNT SLFEDYRVSS SNTSETQYSN SIASLRSYQT DKSWSSNMSF
301: YRSTEYSQSG NEGDIHLELE RLRTEINHFM RIYKLAPDES ISASQQLNDI HTHHTEEILK LQEIWSRLEK TTKMAQQEKE RREATEKEAE YVNGCTEIEV
401: LLGKDVEKSA SHEVSEKQSP EKELACSSEP YVKYTWEEIV AATLSFSDAL KIGVGASGTV YWGSFHHTVG AIKVLNSNEG YTTRQFKQEL EILSRVRHPH
501: VLLLLGACTE KGCLVYEYME NGSLEDRLQC KNNTLPLPWF CRFRIAWEVA SALIFLHNSK PEPIVHRDLK PANILLDNNF VSKIGDAGLS TLFPTLNMPL
601: STMYKDTDPV GTFFYMDPEY QRTGLVSPKS DTYALGMVIL QLLTAKSPMG LALIVETALE RDCLMDILDS KAGQWPKAEA KELAILGLSC LELRRKDRPD
701: LKDQVLPVLE RLKAIAEQAY DSALHDSSVP PNHFICPILK FVQVVMDDPC IAADGYTYNR NAIETWLSRN DTSPMTNLLL PTQEIICNNS LLSAIKDWKA
801: RTQ

Best Arabidopsis Sequence Match ( AT4G25160.1 )
(BLAST)

001: MSRSPDKLAL PPPPPPPPSR TVVVALSGSS KSKYVVTWAI EKFATEGNVG FKLLHIHPMI TSVPTPMGNA IPISEVRDDV VTAYRQEILW QSEEMLKPYT
101: KLFVRRKVAV EVLVIESDNV AAAIAEEVTR DSIDRIVIGG SSRSFFSRKA DICSVISALM PNFCTVYVVS KGKLSCVRPS DSDGNATIRE DGSERTNSSS
201: GSSGPTSDSS DVMSSAHDSQ SRPLSLPVRR MQHFPAIAGQ ASVPMETSSV GSDETRCMSL DAEEARDVSS INRSSTDTTS RWTPRRRDYE ERKEAMSSSS
301: SNREYGNFGT RFSWSGMGVD TTHSRASQQA SNMSDALSEQ SYTDNQVNLN FEVEKLRAEL RHVQEMYAVA QTETFDASRK LGELNQRRLE EAIKLEELKL
401: KEYEARELAE KEKQNFEKAR RDAESMRERA EREIAQRREA ERKSARDTKE KEKLEGTLGS PQLQYQHFAW EEIMAATSSF SEELKIGMGA YGAVYKCNLH
501: HTTAVVKVLQ SAENQLSKQF QQELEILSKI RHPHLVLLLG ACPEQGALVY EYMENGSLED RLFQVNNSPP LPWFERFRIA WEVAAALVFL HKSKPKPIIH
601: RDLKPANILL DHNFVSKVGD VGLSTMVQVD PLSTKFTIYK QTSPVGTLCY IDPEYQRTGR ISSKSDIYSF GMILLQLLTA KPAIALTHFV ESAMDSNDEF
701: LKILDQKAGN WPIEETRELA ALALCCTELR GKDRPDLKDQ ILPALENLKK VAEKARNSFS GVSTQPPTHF ICPLLKDVMN EPCVAADGYT YDRHAIEEWL
801: KEHNTSPMTD SPLHSKNLLP NYTLYTAIME WRSTR

Arabidopsis Description

PUB35U-box domain-containing protein 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW11]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.