Factsheet for GSMUA_Achr3P20380_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr5P21060_001
GSMUA_Achr7P11570_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	GSMUA_Achr10P...	AT2G02950.1	16777956
AT5G64330.1	GSMUA_Achr7P11570_001	AT2G02950.1	16777956
AT5G64330.1	GSMUA_Achr11P...	AT4G25160.1	16777956
AT5G64330.1	GSMUA_Achr5P21060_001	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g00270.t01	Wine grape	cytosol	80.7	68.84
Solyc10g047530.1.1	Tomato	cytosol	78.78	67.21
PGSC0003DMT400006173	Potato	cytosol	78.61	66.86
PGSC0003DMT400083737	Potato	cytosol	76.52	66.77
KRH42114	Soybean	cytosol	77.57	66.37
Solyc01g105680.2.1	Tomato	nucleus	76.17	65.47
KRH23618	Soybean	cytosol	56.0	63.64
KRH10586	Soybean	cytosol	73.74	63.1
KRH21782	Soybean	cytosol	73.91	62.78
Bra024285.1-P	Field mustard	cytosol	77.22	61.24
CDX84515	Canola	cytosol	77.22	61.16
CDY18715	Canola	cytosol	75.65	60.08
TraesCS6A01G085100.1	Wheat	cytosol	76.35	60.05
TraesCSU01G114000.1	Wheat	cytosol	76.87	60.05
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	77.91	59.97
HORVU6Hr1G015480.1	Barley	cytosol	76.17	59.92
TraesCS6B01G117400.1	Wheat	cytosol	76.87	59.89
CDX81221	Canola	cytosol	76.0	59.86
AT5G64330.1	Thale cress	cytosol	77.39	59.65
Bra037773.1-P	Field mustard	cytosol	75.65	59.02
Zm00001d016898_P001	Maize	cytosol	76.0	58.34
Os02t0568200-00	Rice	cytosol	74.26	56.04
EES07014	Sorghum	nucleus	74.61	55.5
GSMUA_Achr1P21440_001	Banana	cytosol	55.65	52.63
Zm00001d004440_P001	Maize	cytosol	58.26	52.51
KXG25806	Sorghum	cytosol	56.52	49.69
GSMUA_Achr4P01950_001	Banana	cytosol	30.26	42.65
GSMUA_Achr6P30010_001	Banana	cytosol	39.48	41.42
GSMUA_Achr5P02440_001	Banana	cytosol	41.22	41.36
GSMUA_Achr9P26110_001	Banana	cytosol	42.09	39.93
GSMUA_Achr2P02890_001	Banana	cytosol	37.91	38.65
GSMUA_Achr5P00550_001	Banana	cytosol	41.74	38.16
GSMUA_Achr5P01710_001	Banana	cytosol	38.43	38.04
GSMUA_AchrUn_...	Banana	cytosol	28.0	37.88
GSMUA_Achr9P19480_001	Banana	extracellular, plasma membrane	32.87	37.43
GSMUA_Achr4P10900_001	Banana	cytosol	36.17	37.34
GSMUA_Achr6P27970_001	Banana	cytosol	33.39	37.14
GSMUA_Achr4P31620_001	Banana	cytosol	38.26	36.85
GSMUA_Achr3P04740_001	Banana	cytosol	36.87	35.93
GSMUA_Achr7P21950_001	Banana	plastid	34.96	35.7
GSMUA_Achr8P16390_001	Banana	cytosol	32.35	35.63
GSMUA_Achr10P...	Banana	cytosol	34.61	35.35
GSMUA_Achr9P26440_001	Banana	cytosol	35.3	34.88
GSMUA_Achr7P26250_001	Banana	cytosol	37.22	34.29
GSMUA_Achr7P26300_001	Banana	cytosol	35.3	34.29
GSMUA_Achr10P...	Banana	cytosol	33.91	34.27
GSMUA_Achr10P...	Banana	cytosol	32.52	33.82
GSMUA_Achr8P04840_001	Banana	cytosol	34.26	33.5
GSMUA_Achr8P30170_001	Banana	plastid	32.35	33.33
GSMUA_Achr1P11260_001	Banana	plastid	32.17	32.29
GSMUA_Achr3P12020_001	Banana	cytosol	30.61	32.23
GSMUA_Achr2P13430_001	Banana	cytosol	37.57	32.19
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	32.87	31.5
GSMUA_Achr11P...	Banana	cytosol, plastid	30.96	30.74
GSMUA_Achr3P14590_001	Banana	cytosol	30.61	30.72
GSMUA_Achr3P25690_001	Banana	nucleus	32.17	15.49

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G20380_001	EnsemblPlants:GSMUA_Achr3P20380_001	EnsemblPlants:GSMUA_Achr3T20380_001	InterPro:IPR000210	InterPro:IPR027356
UniProt:M0SGA4	InterPro:NPH3-like	InterPro:NPH3_dom	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649
PANTHER:PTHR32370	PANTHER:PTHR32370:SF6	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI00029673C5
SEG:seg	:	:	:	:	:

Description

Coleoptile phototropism protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G20380_001]

Coordinates

chr3:-:21532039..21534705

Molecular Weight (calculated)

64880.6 Da

IEP (calculated)

6.592

GRAVY (calculated)

-0.406

Length

575 amino acids

Sequence
(BLAST)

001: MWESESDGRG GGRDLEPDKH DGLKTDGFER RDQSWFVSSD IPSDLLVKVG GVSFHLHKYP LLSRSGRMNR IIYESSRESE PSLVELDDLP GGPEAFELAA
101: KFCYGIAVDL TASNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSIVVLK SCESLSPWAE NLQIVRRCSD PSRSQPVPPD WWFEDVSILR
201: IDHFVRVVTA IKVKGMRFEL IGAAIMHYAS KWLPGLTKEG AQGGEEPWKQ RMVIESLISI IPPQKDCVTC SFLLRLLRLA NMLKVAPALV TELEKRVGMQ
301: LEQATLPDLL IPSFHKSETL YDVDLVQRLL EHFLVQEQTE SSSPGREPYP DKHSYEANQR ASGPNAKTRV ARLLDSYLTE VSRDRNLSLT KFQVLAEALP
401: ESTRTCDDGL YRAVDSYLKA HPTLTEHERK RLCRVMDCQK LSIDACMHAA QNERLPLRVV VQVLFSEQVK ISNAIASSSL KEAKDINTLK FELESMKAKY
501: LELQNDMDNL QRQFEKMSST KPSKQSSSPW STGWKKLSKL TKMTSEANEI GAPMPGTAAT EATKKGPRRW RNSIS

Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)

001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS

Arabidopsis Description

RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.