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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS4A01G382700.4
TraesCS4A01G382900.1
TraesCS7A01G084400.4
TraesCS7D01G079400.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G64330.1 TraesCS4A01G382700.4 AT4G25160.1 16777956
AT5G64330.1 TraesCS4A01G382900.1 AT4G25160.1 16777956
AT5G64330.1 TraesCS7A01G084400.4 AT4G25160.1 16777956
AT5G64330.1 TraesCS7D01G079400.2 AT4G25160.1 16777956
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCSU01G114000.1 Wheat cytosol 97.15 97.42
TraesCS6A01G085100.1 Wheat cytosol 96.21 97.13
HORVU6Hr1G015480.1 Barley cytosol 94.72 95.62
Zm00001d016898_P001 Maize cytosol 81.03 79.84
Os02t0568200-00 Rice cytosol 79.95 77.43
EES07014 Sorghum nucleus 80.62 76.97
GSMUA_Achr3P20380_001 Banana cytosol 59.89 76.87
KRH23618 Soybean cytosol 47.83 69.76
VIT_03s0038g00270.t01 Wine grape cytosol 63.69 69.73
KRH10586 Soybean cytosol 62.87 69.05
KRH42114 Soybean cytosol 62.87 69.05
PGSC0003DMT400006173 Potato cytosol 62.74 68.49
KRH21782 Soybean cytosol 62.74 68.39
Solyc10g047530.1.1 Tomato cytosol 62.2 68.1
PGSC0003DMT400083737 Potato cytosol 59.76 66.92
Solyc01g105680.2.1 Tomato nucleus 60.16 66.37
CDX84515 Canola cytosol 62.74 63.77
Bra024285.1-P Field mustard cytosol 62.6 63.72
AT5G64330.1 Thale cress cytosol 63.41 62.73
CDY18715 Canola cytosol 61.52 62.71
CDX81221 Canola cytosol 61.92 62.6
KRH49804 Soybean endoplasmic reticulum, nucleus, plasma membrane, plastid 62.87 62.12
Bra037773.1-P Field mustard cytosol 61.79 61.87
TraesCS7B01G209700.1 Wheat cytosol 32.52 37.33
TraesCS4B01G078900.3 Wheat cytosol 31.57 36.75
TraesCS5B01G046200.2 Wheat mitochondrion 31.57 36.29
TraesCS5B01G076500.1 Wheat cytosol 30.35 36.07
TraesCS3B01G349200.1 Wheat cytosol 31.17 35.55
TraesCS5B01G377600.1 Wheat cytosol 31.98 34.81
TraesCS4B01G256600.1 Wheat cytosol 28.46 34.71
TraesCS7B01G052800.1 Wheat cytosol 30.22 34.15
TraesCS4B01G255500.1 Wheat cytosol 27.64 33.72
TraesCS5B01G222700.2 Wheat cytosol 28.18 32.65
TraesCS6B01G237800.1 Wheat cytosol 27.64 32.59
TraesCS5B01G461900.4 Wheat plastid 29.0 32.57
TraesCS5B01G145100.1 Wheat plastid 27.78 32.54
TraesCS5B01G168600.3 Wheat cytosol 26.02 32.0
TraesCS5B01G383100.1 Wheat plastid 28.32 31.96
TraesCS2B01G557300.2 Wheat cytosol 27.91 31.84
TraesCS5B01G408200.1 Wheat cytosol 27.51 30.12
TraesCS1B01G298700.1 Wheat cytosol, plastid 16.53 29.47
TraesCS4B01G122300.1 Wheat cytosol, plastid 21.95 28.37
Protein Annotations
MapMan:19.2.2.8.2.2.1Gene3D:3.30.710.10ncoils:CoilGO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009605GO:GO:0009606GO:GO:0009628
GO:GO:0009638GO:GO:0009987GO:GO:0016020GO:GO:0016567GO:GO:0019538InterPro:IPR027356
InterPro:NPH3-likeInterPro:NPH3_domPFAM:PF03000PFscan:PS51649PANTHER:PTHR32370PANTHER:PTHR32370:SF6
InterPro:SKP1/BTB/POZ_sfSUPFAM:SSF54695EnsemblPlantsGene:TraesCS6B01G117400EnsemblPlants:TraesCS6B01G117400.1SEG:seg:
Description
No Description!
Coordinates
chr6B:-:107771278..107773937
Molecular Weight (calculated)
79195.9 Da
IEP (calculated)
7.416
GRAVY (calculated)
-0.267
Length
738 amino acids
Sequence
(BLAST)
001: MWESESDAGE RGLVPVLGVG GSERHDGLKT DGFVRRDHSW YVNSDIPSDL LVKVGDVSFH LHKYPMISRS GKMGRVIYES ATSAASASAA ALDPDTAVAE
101: LDDLPGGADS FELAARFCYG MAVDLTASNI SGLRCAAEYL EMTEDLEEGN LIFKTEAFLS YVVLSSWRDS IVVLKSCEGL SPWAENLQIV RRCSESIAWK
201: ACANPRGVRW AYTGAGSGRP PRSGAASPRW NNAGGGGGGS KESSPGRQPV PPSDWWFEDV SVLRIDHFVR VVTAIKVKGM RFDLIGAAIT HYASKWLPGL
301: TKDVPHAVSG VDEQWAQVSA AGGLHMIIAG PGGKDDVATS APAREQRMVV ESLISIIPPQ RDSVSCGFLL RLLRLAIMLK AAPALVTELE KRVGMQLEQA
401: ALPDLLIPSV GRADTAYDVD LVQRLVEHFL VQEQTEQVSY SPGRGEAHAQ PEREYYGSAA GARMPPANAA AAAAASSSSG LGLNAKARVA RLLDSYLSEV
501: SRDRNLSLTK FQVLAESLPE SARTCDDGLY RAVDSYLKAH PALTEHERKR LCRVMDCQKL SFDACMHAAQ NERLPLRVVV QVLFSEQVKI SNALAGSSAL
601: KAAPDGGTTS APTRRQLLDA TPQSFQEGWA AAKKDINTLK FELESMKAKY LELQHDMDAL QKQVTQSPAG EHGGKVGGGG GKAQQQQGPS AWSNGWKKLG
701: RLAKMTGAEA AGAGGHGHAA AQGEAARKAQ RRWRNSIS
Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)
001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS
Arabidopsis Description
RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.