Factsheet for TraesCS5B01G408200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G197100.1
TraesCS2B01G224600.1
TraesCS2D01G205000.1
TraesCS4A01G275400.1
TraesCS4B01G038900.1
TraesCS4D01G035800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66560.1	TraesCS2A01G197100.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS2B01G224600.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS2D01G205000.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS4A01G275400.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS4B01G038900.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS4D01G035800.1	AT1G03140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G413400.1	Wheat	cytosol	98.66	98.81
TraesCS5A01G403400.1	Wheat	cytosol	98.22	97.93
HORVU5Hr1G098170.1	Barley	cytosol, mitochondrion	95.55	94.01
Os03t0767600-01	Rice	cytosol	84.57	83.46
EER93390	Sorghum	cytosol	83.38	83.14
Zm00001d013182_P003	Maize	cytosol, mitochondrion	81.45	78.09
GSMUA_Achr8P04840_001	Banana	cytosol	47.18	54.08
VIT_00s0207g00230.t01	Wine grape	cytosol	50.0	53.07
CDY45241	Canola	cytosol	45.4	51.17
Solyc02g090070.2.1	Tomato	nucleus	49.26	51.0
KRH08351	Soybean	cytosol	48.96	50.93
PGSC0003DMT400026008	Potato	cytosol	49.26	50.38
KRH28552	Soybean	cytosol	44.21	50.34
AT3G50840.1	Thale cress	cytosol	42.14	49.91
CDY30765	Canola	cytosol	46.59	49.53
TraesCS5B01G383100.1	Wheat	plastid	47.77	49.24
CDX73781	Canola	cytosol	39.17	48.44
KRH76914	Soybean	cytosol	36.5	48.24
KRH69999	Soybean	endoplasmic reticulum	48.52	48.09
CDX77951	Canola	cytosol	39.02	47.99
Bra012082.1-P	Field mustard	cytosol	47.18	47.53
AT5G66560.1	Thale cress	cytosol	47.03	47.46
TraesCS1B01G298700.1	Wheat	cytosol, plastid	29.08	47.34
Bra036858.1-P	Field mustard	cytosol	40.21	47.21
TraesCS5B01G046200.2	Wheat	mitochondrion	38.28	40.19
TraesCS7B01G209700.1	Wheat	cytosol	38.28	40.12
TraesCS5B01G377600.1	Wheat	cytosol	39.91	39.68
TraesCS3B01G349200.1	Wheat	cytosol	35.61	37.09
TraesCS2B01G557300.2	Wheat	cytosol	34.12	35.55
TraesCS5B01G145100.1	Wheat	plastid	29.82	31.9
TraesCS4B01G255500.1	Wheat	cytosol	28.04	31.24
TraesCS5B01G461900.4	Wheat	plastid	30.27	31.05
TraesCS4B01G122300.1	Wheat	cytosol, plastid	25.82	30.47
TraesCS7B01G052800.1	Wheat	cytosol	29.08	30.02
TraesCS5B01G076500.1	Wheat	cytosol	27.6	29.95
TraesCS4B01G256600.1	Wheat	cytosol	26.41	29.42
TraesCS6B01G237800.1	Wheat	cytosol	27.15	29.23
TraesCS4B01G078900.3	Wheat	cytosol	27.15	28.86
TraesCS6B01G117400.1	Wheat	cytosol	30.12	27.51
TraesCS5B01G222700.2	Wheat	cytosol	25.82	27.32
TraesCS5B01G168600.3	Wheat	cytosol	22.85	25.67
GSMUA_Achr3P25690_001	Banana	nucleus	43.92	24.79

Protein Annotations

EnsemblPlants:TraesCS5B01G408200.1	EnsemblPlantsGene:TraesCS5B01G408200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:BTB/POZ_dom
InterPro:IPR000210	InterPro:IPR027356	InterPro:NPH3_dom	InterPro:SKP1/BTB/POZ_sf	ncoils:Coil	PANTHER:PTHR32370
PANTHER:PTHR32370:SF8	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	SEG:seg	SMART:SM00225
SUPFAM:SSF54695	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:583911437..583913888

Molecular Weight (calculated)

72989.6 Da

IEP (calculated)

6.194

GRAVY (calculated)

-0.387

Length

674 amino acids

Sequence
(BLAST)

001: MMQGSRKAKG KGKREVAREE QQHSPKGQAW FCTTGLPSDV VIEVGDMTFH LHKFPLMSKS KKIHDLIMNK ESSLARHAGG GEEEEEDEGA GEIREEQVVL
101: EADEEADAHR IRLPDFPGGA EAFELAAKFC YGVKLDLTPA TAAPLRCAAE RLGMSDDHAE DNLVSRADRF MSHTVLRNPR DAIRALKSCE DLLPLADDLG
201: LVSRCVDAIA AKAAASTPTA LFGWPINDAG AGDRTRHKKN AGAGATSTLF DDLAGLSLAT FTRVIAAMRE RGVGPEVLEG ALIAYAKRSI PGLSRSDRHT
301: GGAGAAAAAA PRSADGDQKA LLETVIVNLP EETIKSSAHT GTAVGATTAR VLFGLLRTAN ILQASEASRD MLERRVASRL PDAAVDDLLI PSYSYLVETL
401: YDVDCVERIV RHFLEGRGGV EEVDEEGSEA ETPGREASRR AMLAVGRLMD AYLGEIATDA NLKTDKFCDL AWALPDGARV YDDGLYRAVD IYIKAHPALR
501: EEEKEKVSGV VDGRKLTLEA CTHAAQNERL PLRTVVQVLF FEQLQLRRAI ARTIVANEGG AAGQGEEDGD SDGGRTWRVA TRGNQMLRLD MDSMRNRVQE
601: LERECTTMRK AIQKIDRRGG GAAGDKGAAA PAAEGRWGSM VTKRFGCKFP AQVCQSQPRS VVARPRRARI EQSP

Best Arabidopsis Sequence Match ( AT5G66560.1 )
(BLAST)

001: MASEKSTSKG QAWFCTTGLP SDIEIEVDDM TFHLHKFPLM SKSRKLHRLI TEQETRSSSS MALITVIDPK VEETDKKGKG HEIEDDKEEE EVEEQEIEEN
101: GYPHIKLEDF PGSSESFEMV AKFCYGVKMD LSASTVVPLR CAAEHLEMTE EYSPDNLISK TERFLSHSVY KSLRESIKAL KACESVSPLA GSLGITEQCI
201: DSIVSRASSA DPSLFGWPVN DGGGRGNISA TDLQLIPGGA AKSRKKPSRD SNMELWFEDL TQLSLPIFKT VILSMRSGDL SSDIIESCLI CYAKKHIPGI
301: LRSNRKPPSS SSTAVSENEQ RELLETITSN LPLDKSSISS TTRFLFGLLR TAIILNAAEI CRDLLERKIG SQLERATLDD LLVPSYSYLN ETLYDVDLVE
401: RILGHFLDTL EQSNTAIVEV DGKSPSLMLV GKLIDGFLAE IASDANLKSD KFYNLAISLP DQARLYDDGL YRAVDVYLKA HPWVSEAERE KICGVMDCQK
501: LTLEACTHAA QNERLPLRAV VQVLFFEQLQ LRHAIAGTLL AAQSPSTSQS TEPRPSAAIR NLTITEEDGD EAEGERQVDA GKWKKTVREN QVLRLDMDTM
601: RTRVHRLERE CSNMKKVIAK IDKEGSSPAT TTDRPRSWSI TKKFGCKFKT QVCDSHEATM VDHRSRRS

Arabidopsis Description

BTB/POZ domain-containing protein At5g66560 [Source:UniProtKB/Swiss-Prot;Acc:Q94A73]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.