CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plasma membrane 1
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG19255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	KXG19255	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016898_P001	Maize	cytosol	87.58	90.39
HORVU6Hr1G015480.1	Barley	cytosol	77.36	81.81
TraesCS6B01G117400.1	Wheat	cytosol	76.97	80.62
TraesCS6A01G085100.1	Wheat	cytosol	76.2	80.57
TraesCSU01G114000.1	Wheat	cytosol	76.71	80.57
Os02t0568200-00	Rice	cytosol	78.4	79.53
GSMUA_Achr3P20380_001	Banana	cytosol	55.5	74.61
VIT_03s0038g00270.t01	Wine grape	cytosol	60.8	69.73
KRH23618	Soybean	cytosol	45.28	69.17
KRH42114	Soybean	cytosol	60.03	69.05
KRH10586	Soybean	cytosol	59.64	68.6
PGSC0003DMT400006173	Potato	cytosol	59.77	68.34
Solyc10g047530.1.1	Tomato	cytosol	59.51	68.25
KRH21782	Soybean	cytosol	59.25	67.65
PGSC0003DMT400083737	Potato	cytosol	56.92	66.77
Solyc01g105680.2.1	Tomato	nucleus	57.7	66.67
Bra024285.1-P	Field mustard	cytosol	59.64	63.59
CDX84515	Canola	cytosol	59.64	63.5
AT5G64330.1	Thale cress	cytosol	60.16	62.33
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	60.16	62.25
CDX81221	Canola	cytosol	58.6	62.05
CDY18715	Canola	cytosol	58.09	62.02
Bra037773.1-P	Field mustard	cytosol	58.34	61.19
KXG25806	Sorghum	cytosol	48.77	57.65
EER91175	Sorghum	cytosol	31.05	38.03
OQU93039	Sorghum	cytosol	29.24	37.11
EES14497	Sorghum	cytosol	31.31	36.78
EES11510	Sorghum	cytosol	30.01	36.48
EER91236	Sorghum	cytosol	29.24	35.7
EER98911	Sorghum	cytosol	28.07	35.06
EER89339	Sorghum	cytosol	28.33	34.49
OQU79444	Sorghum	cytosol	28.72	34.47
EES03716	Sorghum	cytosol	28.98	34.41
KXG39906	Sorghum	cytosol	27.17	34.15
OQU91026	Sorghum	cytosol, nucleus, plastid	26.39	34.11
EES16593	Sorghum	plastid	28.07	33.7
KXG35200	Sorghum	cytosol	23.8	31.83
OQU92601	Sorghum	plastid	27.04	31.62
EER93390	Sorghum	cytosol	26.91	30.77
EES05363	Sorghum	cytosol, nucleus, plastid	25.36	30.48
EES10995	Sorghum	mitochondrion	25.1	29.66
OQU82741	Sorghum	plastid	20.57	26.41
KXG22914	Sorghum	plastid	20.83	22.55

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	EntrezGene:8068928	UniProt:C5XVL3	ncoils:Coil	EnsemblPlants:EES07014
ProteinID:EES07014	ProteinID:EES07014.1	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0019538	InterPro:IPR027356	ProteinID:KXG30477.1	InterPro:NPH3-like	InterPro:NPH3_dom
PFAM:PF03000	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF6	InterPro:SKP1/BTB/POZ_sf	EnsemblPlantsGene:SORBI_3004G187100
SUPFAM:SSF54695	UniParc:UPI0001A85CE6	RefSeq:XP_002454038.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:53919932..53926437

Molecular Weight (calculated)

81743.9 Da

IEP (calculated)

7.775

GRAVY (calculated)

-0.242

Length

773 amino acids

Sequence
(BLAST)

001: MWESESESHA GERGLVPVGG GSSGRHEALK NDGFVRRDQS WYVNSDIPSD LLVKVGDVSF HLHKYPMISR SGRMSRAIYE TAASSSSTDP AAAGDTAAAA
101: VVVDLHDVPG GAGSFELAAR FCYGMAVDLT AGNISGLRCA AEYLEMTEDL EEGNLIFKTE AFLSYVVLSS WRDSIVVLKT CEGLSPWAEN LQIVRRCSES
201: IAWKACANPR GVRWAYTGGA SGGAGATAGG GGGGRPPRAG GGAASPRWNL GGGDSKESSP GRQQAVPPPD WWFEDVSVLR IDHFVRVVTA IKVKGMRFDL
301: IGASITHYAS KWLPGLTKDG PHGGALDEPW AQAQASPGGG LHMIIASGSG GGGGGGGGRD DTTASAPARE QRMVVESLIS IIPPQRDSVS CGFLLRLLRL
401: AIMLKAAPAL VTELEKRVGM QLEQAVLADL LIPSYGRADT AYDVDLVQRL VEHFLVQEQT ELLMASSSSP PGRAGDHQPS SVLPEYYGAR TAAAASASAG
501: LNAKARVARL LDSYLSEVSR DRNLSLTKFQ VLAESLPESA RTCDDGLYRA VDSYLKAHPT LTEHERKRLC RVMDCQKLSL DACMHAAQNE RLPLRVVVQV
601: LFSEQVKISN ALAASASSSS AAAAALLGSS NNNKAADAVM VAPPTRRQML DGTPQSFQEG WAAAKKDINT LKFELESMKA KYLELQHEME TLQKVVERGG
701: GGGGAPSPAV GAKATGGVGV VGKNQSQGPS AWSSGWKKLG RLAKMSGGDG AGQDGHVPGE TPRKPRRWRN SIS

Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)

001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS

Arabidopsis Description

RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.