CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG19255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	KXG19255	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004440_P001	Maize	cytosol	83.33	85.42
GSMUA_Achr3P20380_001	Banana	cytosol	49.69	56.52
KRH23618	Soybean	cytosol	40.52	52.37
VIT_03s0038g00270.t01	Wine grape	cytosol	51.53	50.0
KRH10586	Soybean	cytosol	51.22	49.85
KRH21782	Soybean	cytosol	51.53	49.78
KRH42114	Soybean	cytosol	50.92	49.55
PGSC0003DMT400006173	Potato	cytosol	50.46	48.82
EES07014	Sorghum	nucleus	57.65	48.77
PGSC0003DMT400083737	Potato	cytosol	48.93	48.56
Solyc10g047530.1.1	Tomato	cytosol	50.0	48.52
Solyc01g105680.2.1	Tomato	nucleus	49.08	47.98
Bra024285.1-P	Field mustard	cytosol	52.14	47.03
CDX84515	Canola	cytosol	51.99	46.83
CDX81221	Canola	cytosol	51.38	46.03
CDY18715	Canola	cytosol	50.61	45.72
AT5G64330.1	Thale cress	cytosol	51.83	45.44
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	51.83	45.38
Bra037773.1-P	Field mustard	cytosol	51.07	45.32
EER91175	Sorghum	cytosol	32.42	33.6
EER98911	Sorghum	cytosol	30.58	32.31
OQU91026	Sorghum	cytosol, nucleus, plastid	29.51	32.27
EES11510	Sorghum	cytosol	31.19	32.08
OQU93039	Sorghum	cytosol	29.82	32.02
OQU92601	Sorghum	plastid	32.26	31.92
EES14497	Sorghum	cytosol	31.8	31.61
EES03716	Sorghum	cytosol	31.35	31.49
EES16593	Sorghum	plastid	30.73	31.21
EER91236	Sorghum	cytosol	29.97	30.96
KXG39906	Sorghum	cytosol	28.29	30.08
EER89339	Sorghum	cytosol	29.2	30.08
OQU79444	Sorghum	cytosol	29.51	29.97
KXG35200	Sorghum	cytosol	26.3	29.76
EER93390	Sorghum	cytosol	30.43	29.44
EES05363	Sorghum	cytosol, nucleus, plastid	28.29	28.77
EES10995	Sorghum	mitochondrion	28.29	28.29
OQU82741	Sorghum	plastid	24.92	27.08
KXG22914	Sorghum	plastid	25.54	23.39

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	UniProt:A0A1B6PJH9	ncoils:Coil	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	InterPro:IPR027356	EnsemblPlants:KXG25806
ProteinID:KXG25806	ProteinID:KXG25806.1	InterPro:NPH3-like	InterPro:NPH3_dom	PFAM:PF03000	PFscan:PS51649
PANTHER:PTHR32370	PANTHER:PTHR32370:SF6	InterPro:SKP1/BTB/POZ_sf	EnsemblPlantsGene:SORBI_3006G014900	SUPFAM:SSF54695	UniParc:UPI00081AB970
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:2226572..2229051

Molecular Weight (calculated)

70573.2 Da

IEP (calculated)

7.878

GRAVY (calculated)

-0.199

Length

654 amino acids

Sequence
(BLAST)

001: MNPWEAMERQ NHVAERGLVP VSAGAGDGQV QHDHGAAAKM DGFVRRDQSC RYASSDIPSD LLVKVGGVNF HVHKHPMVTR SGRLARLVDD ATTLHGPDAV
101: TVLELPDLPG GHGAFELAAK FCYGVVVDIT AANVAVLRCA AEYLEMTEEM EEGNLAFRAE SFLSYVVASS WRDSVVVLRA CDESLSPWAD DLQLVRRCSE
201: SVAAKACTSP RAVRWAYAGG RMSSPKTPRV VAGGTASTSD GGGPQADWWV DDVCVLSIDH FVRVVTAVQA RGMRPDLIGA AITRYASKWL SSTGLTINKE
301: NPTSRGGGGG VLQMVVASEG DNSNTNTPTE TTASEQRRIV ESLISILPPQ KDCVSCSFLL RLLRLAVVLK AAPALITEVE KHVGMQLDQA ALPDILVPSY
401: LSGGRSEAAA YDVDLVQRLV EQFVVQEQSG GRGKEKQQDS SKALRVASLI DSYLAEVSRD RNLAVGKFQA LAESLPESAR VCHDGLYRAV DTYLKAHPAV
501: TEHERKRLCR AVVDCGKLSR EVRTHAAGNE RLPLRVVVQV LLSEQAKMAG ALGKVGKKDD DVVAALRLEV ESVNAKYMEL QREVELLQGQ LERVRLPPAS
601: AAAAAAKQQN VSGWSSGWKK LGRLGRVQVE PPVVTAAAGE TGRREPRRRR NSAS

Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)

001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS

Arabidopsis Description

RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.