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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX92680
CDY03026
CDY03375
CDY09346
CDY11059
CDY12184
CDY17423
CDY34347
CDY45189
CDY60835
CDY62179

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G64330.1 CDY03026 AT2G02950.1 16777956
AT5G64330.1 CDY09346 AT2G02950.1 16777956
AT5G64330.1 CDY17423 AT2G02950.1 16777956
AT5G64330.1 CDY45189 AT2G02950.1 16777956
AT5G64330.1 CDY60835 AT2G02950.1 16777956
AT5G64330.1 CDY62179 AT2G02950.1 16777956
AT5G64330.1 CDX92680 AT4G25160.1 16777956
AT5G64330.1 CDY03375 AT4G25160.1 16777956
AT5G64330.1 CDY11059 AT4G25160.1 16777956
AT5G64330.1 CDY12184 AT4G25160.1 16777956
AT5G64330.1 CDY34347 AT4G25160.1 16777956
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra037773.1-P Field mustard cytosol 99.59 97.83
CDX81221 Canola cytosol 96.82 96.03
CDX84515 Canola cytosol 88.95 88.71
AT5G64330.1 Thale cress cytosol 88.95 86.33
VIT_03s0038g00270.t01 Wine grape cytosol 70.99 76.26
KRH42114 Soybean cytosol 70.58 76.04
GSMUA_Achr3P20380_001 Banana cytosol 60.08 75.65
Solyc10g047530.1.1 Tomato cytosol 69.75 74.93
Solyc01g105680.2.1 Tomato nucleus 69.2 74.89
PGSC0003DMT400083737 Potato cytosol 68.09 74.81
PGSC0003DMT400006173 Potato cytosol 69.75 74.7
KRH23618 Soybean cytosol 51.66 73.91
KRH10586 Soybean cytosol 67.68 72.92
KRH21782 Soybean cytosol 67.54 72.23
KRH49804 Soybean endoplasmic reticulum, nucleus, plasma membrane, plastid 70.86 68.67
TraesCS6B01G117400.1 Wheat cytosol 62.71 61.52
HORVU6Hr1G015480.1 Barley cytosol 62.02 61.42
TraesCSU01G114000.1 Wheat cytosol 62.29 61.28
TraesCS6A01G085100.1 Wheat cytosol 61.74 61.15
Zm00001d016898_P001 Maize cytosol 61.46 59.41
Os02t0568200-00 Rice cytosol 62.29 59.19
EES07014 Sorghum nucleus 62.02 58.09
Zm00001d004440_P001 Maize cytosol 47.24 53.6
GSMUA_Achr1P21440_001 Banana cytosol 42.68 50.82
KXG25806 Sorghum cytosol 45.72 50.61
CDY72257 Canola cytosol 29.97 42.89
CDY72267 Canola cytosol 29.97 42.89
CDY68489 Canola cytosol, plastid 25.14 40.53
CDX90249 Canola cytosol, mitochondrion, nucleus 34.53 39.62
CDY38923 Canola cytosol 25.97 39.5
CDX89539 Canola cytosol 25.97 39.25
CDX96986 Canola cytosol 33.84 39.14
CDY10395 Canola cytosol 29.14 38.86
CDX69851 Canola cytosol 33.56 38.57
CDY09586 Canola cytosol 34.94 38.57
CDY02293 Canola cytosol, mitochondrion, nucleus 35.08 38.54
CDX70320 Canola cytosol 30.39 38.46
CDX81314 Canola cytosol 27.9 38.4
CDY12846 Canola cytosol 29.83 38.23
CDY44035 Canola cytosol 30.25 38.09
CDY18660 Canola cytosol 27.76 38.07
CDX85639 Canola cytosol 29.97 37.94
CDY22422 Canola cytosol 30.11 37.91
CDY69095 Canola cytosol 29.28 37.79
CDY50369 Canola cytosol 26.66 37.62
CDX80858 Canola cytosol 30.52 37.59
CDX72639 Canola cytosol 29.83 37.37
CDX73781 Canola cytosol 28.04 37.25
CDY27653 Canola cytosol 31.77 37.22
CDX81462 Canola cytosol 30.8 36.98
CDY11245 Canola cytosol 30.52 36.96
CDY29566 Canola cytosol 29.42 36.85
CDY45241 Canola cytosol 30.39 36.79
CDX77951 Canola cytosol 27.49 36.31
CDY09812 Canola cytosol 30.39 36.18
CDY37223 Canola cytosol 30.11 36.15
CDX99692 Canola cytosol, mitochondrion, nucleus 32.18 36.12
CDY30765 Canola cytosol 31.63 36.12
CDX69627 Canola cytosol 30.25 36.08
CDX68790 Canola cytosol 28.31 35.84
CDY37857 Canola cytosol 29.7 35.83
CDY57436 Canola cytosol 29.42 35.32
CDX75198 Canola cytosol 28.04 35.18
CDY12841 Canola cytosol 29.28 35.16
CDY30615 Canola cytosol 23.89 34.67
CDY57361 Canola cytosol 23.76 34.47
CDX73937 Canola plastid 27.62 34.25
CDX83620 Canola cytosol 25.83 34.19
CDY23992 Canola cytosol 26.66 34.16
CDX84827 Canola cytosol 26.66 34.16
CDY10743 Canola cytosol 27.35 34.08
CDX86278 Canola cytosol 29.14 34.03
CDY00659 Canola plastid 27.49 34.02
CDY37449 Canola cytosol 22.79 33.95
CDY09561 Canola cytosol 28.31 33.94
CDX85365 Canola cytosol 29.01 33.87
CDY17704 Canola cytosol 26.11 33.69
CDX77798 Canola cytosol 26.11 33.69
CDY18140 Canola cytosol 29.28 33.65
CDY02075 Canola cytosol 26.93 33.62
CDY02305 Canola cytosol 28.18 33.61
CDX89922 Canola cytosol 29.14 33.49
CDY52208 Canola plastid 29.7 33.28
CDY13635 Canola cytosol 26.38 33.28
CDX83030 Canola plastid 24.45 33.08
CDY32492 Canola cytosol 29.01 32.92
CDY29723 Canola cytosol 30.25 31.42
CDY20341 Canola cytosol 29.97 30.56
CDY72506 Canola cytosol 5.25 29.92
CDY12056 Canola plasma membrane 34.12 15.3
Protein Annotations
MapMan:19.2.2.8.2.2.1Gene3D:3.30.710.10GO:A0A078FWA4UniProt:A0A078FWA4InterPro:BTB/POZ_domEnsemblPlants:CDY18715
ProteinID:CDY18715ProteinID:CDY18715.1ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00005799001InterPro:IPR000210InterPro:IPR027356InterPro:NPH3-likeInterPro:NPH3_domPFAM:PF03000
PFscan:PS50097PFscan:PS51649PANTHER:PTHR32370PANTHER:PTHR32370:SF6InterPro:SKP1/BTB/POZ_sfSUPFAM:SSF54695
UniPathway:UPA00143UniParc:UPI0004EE05ACSEG:seg:::
Description
BnaA09g06800DBnaA09g06800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWA4]
Coordinates
chrLK032087:-:662956..667323
Molecular Weight (calculated)
80580.2 Da
IEP (calculated)
8.454
GRAVY (calculated)
-0.426
Length
724 amino acids
Sequence
(BLAST)
001: MMWESESDSG VVGGGREYGN EVLSSNKHGS VRTDGFELRG QSWFVATDIS SDLLVKICDM NFHLHKYPLL SRSGKMNRLI YESPREPDPT ILILDDLPGG
101: PEAFELASKF CYGVPVDLTA TNISGLRCAA EYLEMTEDLE EGNLIFKTEA FLSYVVLSSW RDSILVLKSC EKLSPWAENL QIVRRCSESI AWKACSNPKG
201: IRWPYTGKSP SLSSSPKTTN NFASSSPKWN ETKDSSLYCS PSRNNNNNQH VPPDWWFEDV SILRIDHFVR VITAIKVKGM RFELLGAAIM HYAGKWLPGV
301: IKEGAPAPCG SNSSGGSSSH DNWKGGLHMV LSGKPNAHQD STAYLAGHVT SPKEQRMIVE SLISIIPPQK DSVTCTFLLR LLRAASMLKV APALTTELEK
401: RVGMQLEQAT LQDLLIKGET MYDVDLVQRL LEHFLVQEQT EGSSPSRMSP SRGMYAEAGV PRGNSISGNN SNNSQNAKMR VARLVDGYLT EVARDRNLPL
501: TKFQVLAEAL PESARTCDDG LYRAIDSYLK AHPTLSEHER KRLCRVMDCQ KLSMDACMHA AQNERLPLRV VVQVLFSEQV KISNALANTS LKESTTLGEA
601: MGTTYQPMIP NRKTLIEATP QSFQARWAAA KKDINTLKFE IETVKTKYVE LQNEMEAMQR QFEKTGKVKT STSSSSAWSS GWKKLSKFTK MTVPESPDVS
701: RGEQAGGVDP QPARKPRRWR NSIS
Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)
001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS
Arabidopsis Description
RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.