Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10743 | Canola | cytosol | 98.79 | 98.62 |
| Bra018309.1-P | Field mustard | cytosol, plastid | 98.97 | 97.12 |
| CDX84827 | Canola | cytosol | 86.9 | 89.2 |
| CDY23992 | Canola | cytosol | 86.55 | 88.85 |
| AT2G30520.1 | Thale cress | cytosol | 89.66 | 87.69 |
| VIT_06s0004g08230.t01 | Wine grape | mitochondrion | 71.55 | 72.55 |
| PGSC0003DMT400031245 | Potato | cytosol | 69.83 | 70.31 |
| Solyc07g043130.2.1 | Tomato | cytosol | 69.14 | 69.62 |
| KRH30675 | Soybean | cytosol | 25.69 | 67.42 |
| KRG98106 | Soybean | cytosol | 66.03 | 66.84 |
| KRH72843 | Soybean | cytosol | 65.34 | 65.34 |
| KRH17211 | Soybean | cytosol | 64.48 | 64.59 |
| KRH30676 | Soybean | plastid | 28.79 | 58.6 |
| GSMUA_Achr5P29690_001 | Banana | cytosol, plastid | 54.14 | 52.33 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 52.07 | 52.16 |
| TraesCS4D01G120400.1 | Wheat | cytosol, plastid | 46.38 | 47.11 |
| TraesCS4B01G122300.1 | Wheat | cytosol, plastid | 46.38 | 47.11 |
| TraesCS4A01G192900.1 | Wheat | cytosol | 45.0 | 46.44 |
| Zm00001d005051_P001 | Maize | cytosol | 44.83 | 45.06 |
| Os12t0117400-01 | Rice | plasma membrane | 43.62 | 44.39 |
| OQU82741 | Sorghum | plastid | 44.31 | 42.69 |
| HORVU4Hr1G023260.3 | Barley | cytosol, plastid | 46.03 | 42.65 |
| Os11t0118300-01 | Rice | cytosol, mitochondrion, nucleus | 43.62 | 41.0 |
| CDY68489 | Canola | cytosol, plastid | 31.21 | 40.31 |
| Zm00001d023314_P001 | Maize | cytosol | 42.76 | 38.87 |
| CDY37857 | Canola | cytosol | 39.83 | 38.5 |
| CDY57436 | Canola | cytosol | 39.48 | 37.98 |
| CDY12841 | Canola | cytosol | 38.97 | 37.48 |
| CDY30615 | Canola | cytosol | 31.38 | 36.47 |
| CDY57361 | Canola | cytosol | 31.03 | 36.07 |
| CDX86278 | Canola | cytosol | 37.76 | 35.32 |
| CDX85365 | Canola | cytosol | 37.76 | 35.32 |
| KXG22914 | Sorghum | plastid | 43.45 | 35.29 |
| CDY00659 | Canola | plastid | 34.48 | 34.19 |
| CDX73937 | Canola | plastid | 34.31 | 34.08 |
| CDX89922 | Canola | cytosol | 36.55 | 33.65 |
| CDY18140 | Canola | cytosol | 36.21 | 33.33 |
| CDY09561 | Canola | cytosol | 34.66 | 33.28 |
| CDY37449 | Canola | cytosol | 27.59 | 32.92 |
| CDY32492 | Canola | cytosol | 36.21 | 32.92 |
| CDY02305 | Canola | cytosol | 34.31 | 32.78 |
| CDX89539 | Canola | cytosol | 26.55 | 32.15 |
| CDY52208 | Canola | plastid | 35.69 | 32.04 |
| CDX73781 | Canola | cytosol | 29.66 | 31.56 |
| CDX70320 | Canola | cytosol | 31.03 | 31.47 |
| CDY38923 | Canola | cytosol | 25.69 | 31.3 |
| CDY10395 | Canola | cytosol | 29.14 | 31.12 |
| CDX85639 | Canola | cytosol | 30.69 | 31.12 |
| CDX83030 | Canola | plastid | 28.62 | 31.03 |
| CDY72267 | Canola | cytosol | 27.07 | 31.03 |
| CDX77951 | Canola | cytosol | 29.14 | 30.84 |
| CDY72257 | Canola | cytosol | 26.9 | 30.83 |
| CDX69627 | Canola | cytosol | 31.9 | 30.48 |
| CDX80858 | Canola | cytosol | 30.69 | 30.27 |
| CDY12846 | Canola | cytosol | 29.48 | 30.27 |
| CDX81314 | Canola | cytosol | 27.41 | 30.23 |
| CDY69095 | Canola | cytosol | 29.14 | 30.12 |
| CDY27653 | Canola | cytosol | 31.9 | 29.94 |
| CDY11245 | Canola | cytosol | 30.69 | 29.77 |
| CDY18660 | Canola | cytosol | 27.07 | 29.73 |
| CDX90249 | Canola | cytosol, mitochondrion, nucleus | 32.07 | 29.48 |
| CDY09812 | Canola | cytosol | 30.86 | 29.44 |
| CDY45241 | Canola | cytosol | 30.34 | 29.43 |
| CDX68790 | Canola | cytosol | 28.45 | 28.85 |
| CDY09586 | Canola | cytosol | 32.59 | 28.81 |
| CDX75198 | Canola | cytosol | 28.62 | 28.77 |
| CDY02293 | Canola | cytosol, mitochondrion, nucleus | 32.41 | 28.53 |
| CDX99692 | Canola | cytosol, mitochondrion, nucleus | 31.55 | 28.37 |
| CDY30765 | Canola | cytosol | 30.52 | 27.92 |
| CDX84515 | Canola | cytosol | 34.83 | 27.82 |
| CDY44035 | Canola | cytosol | 27.24 | 27.48 |
| CDY37223 | Canola | cytosol | 28.45 | 27.36 |
| CDX81462 | Canola | cytosol | 28.45 | 27.36 |
| CDY29566 | Canola | cytosol | 27.07 | 27.16 |
| CDY22422 | Canola | cytosol | 26.9 | 27.13 |
| CDX72639 | Canola | cytosol | 26.9 | 26.99 |
| CDY18715 | Canola | cytosol | 33.62 | 26.93 |
| CDX81221 | Canola | cytosol | 33.79 | 26.85 |
| CDX96986 | Canola | cytosol | 28.62 | 26.52 |
| CDY50369 | Canola | cytosol | 23.1 | 26.12 |
| CDX83620 | Canola | cytosol | 24.14 | 25.59 |
| CDX69851 | Canola | cytosol | 27.76 | 25.56 |
| CDY17704 | Canola | cytosol | 24.14 | 24.96 |
| CDX77798 | Canola | cytosol | 24.14 | 24.96 |
| CDY13635 | Canola | cytosol | 24.48 | 24.74 |
| CDY72506 | Canola | cytosol | 5.17 | 23.62 |
| CDY29723 | Canola | cytosol | 26.72 | 22.24 |
| CDY20341 | Canola | cytosol | 26.9 | 21.97 |
| CDY12056 | Canola | plasma membrane | 32.07 | 11.52 |
Protein Annotations
| Gene3D:3.30.710.10 | MapMan:35.1 | GO:A0A078EJ52 | InterPro:BTB/POZ_dom | EnsemblPlants:CDY02075 | ProteinID:CDY02075 |
| ProteinID:CDY02075.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0009605 |
| GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009638 | EnsemblPlantsGene:GSBRNA2T00113448001 | InterPro:IPR000210 | InterPro:IPR027356 |
| InterPro:NPH3_dom | PFAM:PF00651 | PFAM:PF03000 | PFscan:PS50097 | PFscan:PS51649 | PANTHER:PTHR32370 |
| PANTHER:PTHR32370:SF17 | InterPro:RPT2 | InterPro:SKP1/BTB/POZ_sf | SMART:SM00225 | SUPFAM:SSF54695 | UniPathway:UPA00143 |
| UniParc:UPI0004EE2E65 | SEG:seg | : | : | : | : |
Description
BnaC04g14260D
Coordinates
chrLK031931:-:1151619..1154553
Molecular Weight (calculated)
64343.0 Da
IEP (calculated)
6.219
GRAVY (calculated)
-0.175
Length
580 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEANNPIN MNSMSSSLQR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDIDVT RIDISDIPGG PEMFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAVVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FTDVVASMKQ RGLKPSSLAS AIITYTERSL RDLFSDPENN DSEERSQQRD LVESIVSLLP SDKGLFPINF LCSLLRCVVF LEASLASKNE LEKRISVVLE
301: HVTVDDLLIP SFTYDGERLL DLDSVRRIIS TFVEKEKNVG VFNGGDFNKG LCSASLQRVA RTVDSYLAEI ATYGELTISK FNAIANLVQK SARKSDDDLY
401: RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYEARLHASQ NKRLPVNIVL HALYYDQLKL RSGVEDKEGA VVVVPEAVAT RGQVKADASL AKENEALRSE
501: LMKMKMYVSD LQKSGAAGAS SSNAPPSNKK SSKSTFFSSV SKKLGKLNPF RHGSKDTSNI DEDLAGVDIT KPRRRRFSIS
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAVVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FTDVVASMKQ RGLKPSSLAS AIITYTERSL RDLFSDPENN DSEERSQQRD LVESIVSLLP SDKGLFPINF LCSLLRCVVF LEASLASKNE LEKRISVVLE
301: HVTVDDLLIP SFTYDGERLL DLDSVRRIIS TFVEKEKNVG VFNGGDFNKG LCSASLQRVA RTVDSYLAEI ATYGELTISK FNAIANLVQK SARKSDDDLY
401: RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYEARLHASQ NKRLPVNIVL HALYYDQLKL RSGVEDKEGA VVVVPEAVAT RGQVKADASL AKENEALRSE
501: LMKMKMYVSD LQKSGAAGAS SSNAPPSNKK SSKSTFFSSV SKKLGKLNPF RHGSKDTSNI DEDLAGVDIT KPRRRRFSIS
001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS
Arabidopsis Description
RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.