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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1
TraesCS4A01G376500.1
TraesCS7A01G077700.1
TraesCS7A01G078000.2
TraesCS7D01G073300.1
TraesCS7D01G073400.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G30520.1 TraesCS1A01G427400.1 AT2G42580.1 19000166
AT2G30520.1 TraesCS1B01G462300.1 AT2G42580.1 19000166
AT2G30520.1 TraesCS1D01G437100.1 AT2G42580.1 19000166
AT2G30520.1 TraesCS3A01G143000.1 AT2G42580.1 19000166
AT2G30520.1 TraesCS3A01G221800.1 AT2G42580.1 19000166
AT2G30520.1 TraesCS3B01G162100.1 AT2G42580.1 19000166
AT2G30520.1 TraesCS3B01G251600.1 AT2G42580.1 19000166
AT2G30520.1 TraesCS3D01G144600.1 AT2G42580.1 19000166
AT2G30520.1 TraesCS3D01G231300.1 AT2G42580.1 19000166
AT2G30520.1 TraesCS4A01G376500.1 AT5G66280.1 21798944
AT2G30520.1 TraesCS7A01G077700.1 AT5G66280.1 21798944
AT2G30520.1 TraesCS7A01G078000.2 AT5G66280.1 21798944
AT2G30520.1 TraesCS7D01G073300.1 AT5G66280.1 21798944
AT2G30520.1 TraesCS7D01G073400.1 AT5G66280.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4B01G122300.1 Wheat cytosol, plastid 96.62 95.1
TraesCS4D01G120400.1 Wheat cytosol, plastid 96.09 94.57
HORVU4Hr1G023260.3 Barley cytosol, plastid 93.95 84.34
Os12t0117400-01 Rice plasma membrane 74.91 73.86
Zm00001d005051_P001 Maize cytosol 70.28 68.46
Os11t0118300-01 Rice cytosol, mitochondrion, nucleus 74.73 68.07
OQU82741 Sorghum plastid 71.17 66.45
Zm00001d023314_P001 Maize cytosol 68.51 60.34
KRH30675 Soybean cytosol 21.89 55.66
KXG22914 Sorghum plastid 69.22 54.48
GSMUA_Achr11P... Banana cytosol, plastid 51.42 49.91
GSMUA_Achr5P29690_001 Banana cytosol, plastid 52.49 49.17
VIT_06s0004g08230.t01 Wine grape mitochondrion 47.69 46.85
KRG98106 Soybean cytosol 46.98 46.07
Solyc07g043130.2.1 Tomato cytosol 46.98 45.83
PGSC0003DMT400031245 Potato cytosol 46.98 45.83
CDY10743 Canola cytosol 46.98 45.44
KRH72843 Soybean cytosol 46.62 45.17
CDY02075 Canola cytosol 46.44 45.0
Bra018309.1-P Field mustard cytosol, plastid 47.15 44.84
CDX84827 Canola cytosol 45.02 44.78
CDY23992 Canola cytosol 44.48 44.25
KRH17211 Soybean cytosol 45.55 44.21
Bra022805.1-P Field mustard cytosol 45.2 44.17
AT2G30520.1 Thale cress cytosol 46.44 44.01
KRH30676 Soybean plastid 17.97 35.44
TraesCS4A01G049300.1 Wheat cytosol 33.99 31.41
TraesCS5A01G146300.1 Wheat plastid 30.78 27.46
TraesCS7A01G184200.2 Wheat plastid 32.56 27.4
TraesCS5A01G379300.1 Wheat cytosol, plastid 30.43 26.27
TraesCS5A01G403400.1 Wheat cytosol 31.32 26.04
TraesCS7A01G309700.1 Wheat cytosol 29.36 25.66
TraesCS5A01G042600.1 Wheat cytosol 27.94 24.8
TraesCS5A01G375500.3 Wheat peroxisome 28.29 24.69
TraesCS6A01G208800.2 Wheat cytosol 27.05 24.24
TraesCS3A01G317300.1 Wheat cytosol 27.4 23.73
TraesCS5A01G070700.1 Wheat cytosol 25.98 23.47
TraesCS2A01G526900.1 Wheat cytosol 26.69 23.01
TraesCS5A01G171100.1 Wheat cytosol 23.49 23.0
TraesCS4A01G048200.1 Wheat cytosol 24.56 22.77
TraesCS7A01G149100.1 Wheat cytosol 26.51 22.75
TraesCS4A01G236100.1 Wheat cytosol 25.27 22.4
TraesCS6A01G085100.1 Wheat cytosol 29.0 22.3
TraesCS5A01G223800.1 Wheat cytosol 25.98 22.02
Protein Annotations
Gene3D:3.30.710.10MapMan:35.1InterPro:BTB/POZ_domGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0008150
GO:GO:0009605GO:GO:0009606GO:GO:0009628GO:GO:0009638InterPro:IPR000210InterPro:IPR027356
InterPro:NPH3_domPFAM:PF03000PFscan:PS50097PFscan:PS51649PANTHER:PTHR32370PANTHER:PTHR32370:SF17
InterPro:RPT2InterPro:SKP1/BTB/POZ_sfSUPFAM:SSF54695EnsemblPlantsGene:TraesCS4A01G192900EnsemblPlants:TraesCS4A01G192900.1SEG:seg
Description
No Description!
Coordinates
chr4A:+:473940082..473942130
Molecular Weight (calculated)
59681.5 Da
IEP (calculated)
8.954
GRAVY (calculated)
-0.052
Length
562 amino acids
Sequence
(BLAST)
001: MERTSQWVSS QDVPTDLIVR VAGAAFPLHK AVMVPKCGYI RKAVAMATRP DPAATVEIEL DGLPGGADAF EKATRYCYGA NFEISARNAA PLLCAAAFLD
101: MQPADGGLAR RVEEFLAQAG LRTLLNAIAV LRSCEGPLLV AAEELGVARR AADAVALRIC NEVLFPTRSP PEWWASELAA LSPASFHRVF AALRCRRAGP
201: EVLVAAATAY AELLLADGKA SDHRALLESV VAVLPSANDA PLPAAFLCRL LHDAVTSEAS AKTCRDLELR LAAVLDQATA GDLLALALDG AGERVINTES
301: LRRVVAAFVE RESGAGRNRR ASLSGAAALG AGALQKVAKM VDEVAAEIAT DESLPISKFV GVAGAVPKDA RATHDCLYRA VDIYLKAHPK LDEIEREKVC
401: SVMDTLKLSY TARIHASQNK RLPLQAVLSA LYYDQLKLRS AGVGHDDEDS DARSEAGSAR MQAKADAALA RENEALRSEL ARMRAHMSSG VQQSKGSGSR
501: TAATATVPGK KASFFGSMSR TLSRLNPFRA GGGWSKDTSS IRDSRGGAMN VVKPKRRRSS IS
Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)
001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS
Arabidopsis Description
RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.