Factsheet for Os12t0117400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0218200-00
Os05t0210600-01
Os05t0587300-01
Os06t0137700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	Os01t0218200-00	AT2G42580.1	19000166
AT2G30520.1	Os05t0210600-01	AT2G42580.1	19000166
AT2G30520.1	Os05t0587300-01	AT2G42580.1	19000166
AT2G30520.1	Os06t0137700-01	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	97.72	90.28
TraesCS4A01G192900.1	Wheat	cytosol	73.86	74.91
TraesCS4B01G122300.1	Wheat	cytosol, plastid	74.39	74.26
TraesCS4D01G120400.1	Wheat	cytosol, plastid	74.39	74.26
HORVU4Hr1G023260.3	Barley	cytosol, plastid	73.86	67.25
Zm00001d005051_P001	Maize	cytosol	66.84	66.03
OQU82741	Sorghum	plastid	69.3	65.61
Zm00001d023314_P001	Maize	cytosol	67.37	60.19
KXG22914	Sorghum	plastid	67.72	54.06
KRH30675	Soybean	cytosol	20.0	51.58
GSMUA_Achr11P...	Banana	cytosol, plastid	49.82	49.05
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	51.4	48.83
VIT_06s0004g08230.t01	Wine grape	mitochondrion	45.44	45.28
KRH17211	Soybean	cytosol	45.26	44.56
KRH72843	Soybean	cytosol	45.26	44.48
PGSC0003DMT400031245	Potato	cytosol	44.91	44.44
Solyc07g043130.2.1	Tomato	cytosol	44.74	44.27
CDY10743	Canola	cytosol	44.91	44.06
KRG98106	Soybean	cytosol	44.21	43.98
CDY02075	Canola	cytosol	44.39	43.62
Bra018309.1-P	Field mustard	cytosol, plastid	45.09	43.49
CDX84827	Canola	cytosol	42.98	43.36
CDY23992	Canola	cytosol	42.81	43.19
AT2G30520.1	Thale cress	cytosol	44.56	42.83
Bra022805.1-P	Field mustard	cytosol	43.16	42.78
KRH30676	Soybean	plastid	17.54	35.09
Os03t0206700-00	Rice	plasma membrane	33.51	30.51
Os03t0347700-01	Rice	mitochondrion, plastid	33.33	28.32
Os11t0118500-00	Rice	plastid	29.65	26.28
Os04t0636500-01	Rice	plasma membrane	29.3	25.93
Os12t0117600-01	Rice	plastid	29.3	25.65
Os08t0130600-01	Rice	plasma membrane	28.6	25.43
Os12t0613250-00	Rice	plasma membrane	27.72	24.31
Os03t0738900-00	Rice	nucleus, plasma membrane, plastid	27.89	24.24
Os03t0767600-01	Rice	cytosol	28.95	24.16
Os04t0477000-01	Rice	cytosol, mitochondrion, plastid	25.96	23.6
Os03t0205700-01	Rice	cytosol	24.91	23.47
Os01t0780600-01	Rice	plasma membrane	26.49	22.91
Os12t0583500-01	Rice	cytosol, plasma membrane	25.61	22.88
Os09t0420900-01	Rice	cytosol	24.74	22.82
Os03t0609800-02	Rice	cytosol	25.26	22.71
Os02t0568200-00	Rice	cytosol	29.47	22.05
Os09t0266600-01	Rice	cytosol	15.44	21.15
Os06t0184500-00	Rice	cytosol	23.51	20.81
Os02t0594700-01	Rice	cytosol, mitochondrion	4.74	14.21
Os12t0613300-02	Rice	nucleus	0.0	0.0

Protein Annotations

MapMan:35.1	EntrezGene:4351333	ProteinID:ABA95649.1	ProteinID:BAT15619.1	ncoils:Coil	ProteinID:EEE52651.1
GO:GO:0003674	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009605
GO:GO:0009606	GO:GO:0009628	GO:GO:0009638	GO:GO:0009987	InterPro:IPR027356	InterPro:NPH3_dom
EnsemblPlantsGene:Os12g0117400	EnsemblPlants:Os12t0117400-01	PFAM:PF03000	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF17
UniProt:Q2QYI8	InterPro:RPT2	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI0000681B5C	RefSeq:XP_015620163.1
SEG:seg	:	:	:	:	:

Description

Similar to RPT2-like protein. (Os12t0117400-01)

Coordinates

chr12:-:861211..863519

Molecular Weight (calculated)

60544.6 Da

IEP (calculated)

8.466

GRAVY (calculated)

-0.029

Length

570 amino acids

Sequence
(BLAST)

001: MDRTSQWVSS PDIPADLLIR IADDVFPLLK GVMVPKCGYI RKAVAAARGG ATATVDLDLS ALPGGADAFD KAARYCYGAN FEISVRNAAA LLCAAAFLDM
101: HPTDGGLARR VEEFLAKVGL RTLPGAVAVL RYCEGLLPAA EEIGVVQRSA DAIALRICNE VLFPTRSPPE WWTAELAALS PASFHKVITA LRCRRAEPEV
201: LVAAATAYAE LLLAEVLAAD GHAADHSGMH RALVESVVAV LPSTDDAPLP AAFLCRLLHV AITICASAKT CRDLELRVAA VLDQATAGDL LTVALDSAGE
301: RVQNVDTVRR IITAFVERDS AASSGGANGR SRRASLSGAG ALQGGGGAMQ TVAKTVDEVA AEIATEESLP ISKFVGLAGA VPKEARATHD CLYRAVDIYL
401: KAHPALEEME REKVCSVMDP LKLSYQGRLH ASQNNRLPLQ AVLSALYYDR LKLRSGDEGG GGWDAYGNGV MRSSAAGSAR KQAKEEASLA RENEALRSEL
501: ARMRAYVSGM QQQSKGSSSS RGKKGSWLRT LSRLNPFKAG IWGKDTSGIV DGKTDAMNSV KSKRRRFSIS

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.