Factsheet for Bra018309.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P
Bra012067.1-P
Bra031811.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	Bra000267.1-P	AT2G42580.1	19000166
AT2G30520.1	Bra004709.1-P	AT2G42580.1	19000166
AT2G30520.1	Bra012067.1-P	AT5G66280.1	21798944
AT2G30520.1	Bra031811.1-P	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10743	Canola	cytosol	98.14	99.83
CDY02075	Canola	cytosol	97.12	98.97
AT2G30520.1	Thale cress	cytosol	90.19	89.88
Bra022805.1-P	Field mustard	cytosol	87.14	89.57
VIT_06s0004g08230.t01	Wine grape	mitochondrion	71.74	74.13
PGSC0003DMT400031245	Potato	cytosol	70.05	71.88
Solyc07g043130.2.1	Tomato	cytosol	69.37	71.18
KRG98106	Soybean	cytosol	66.33	68.41
KRH30675	Soybean	cytosol	25.38	67.87
KRH72843	Soybean	cytosol	66.16	67.41
KRH17211	Soybean	cytosol	64.81	66.15
KRH30676	Soybean	plastid	29.78	61.75
GSMUA_Achr11P...	Banana	cytosol, plastid	52.12	53.2
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	53.98	53.17
TraesCS4D01G120400.1	Wheat	cytosol, plastid	46.19	47.81
TraesCS4B01G122300.1	Wheat	cytosol, plastid	46.19	47.81
TraesCS4A01G192900.1	Wheat	cytosol	44.84	47.15
Zm00001d005051_P001	Maize	cytosol	44.67	45.75
Os12t0117400-01	Rice	plasma membrane	43.49	45.09
HORVU4Hr1G023260.3	Barley	cytosol, plastid	45.85	43.29
OQU82741	Sorghum	plastid	43.82	43.02
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	43.49	41.65
Zm00001d023314_P001	Maize	cytosol	42.47	39.34
Bra012158.1-P	Field mustard	cytosol	39.76	39.1
Bra031830.1-P	Field mustard	cytosol	34.86	37.32
Bra037460.1-P	Field mustard	cytosol	37.9	36.13
KXG22914	Sorghum	plastid	43.15	35.71
Bra036043.1-P	Field mustard	cytosol	32.32	34.85
Bra001349.1-P	Field mustard	plastid	34.35	34.82
Bra033365.1-P	Field mustard	cytosol	36.21	33.97
Bra032401.1-P	Field mustard	cytosol	34.52	33.61
Bra032564.1-P	Field mustard	cytosol, plastid	35.7	33.07
Bra029894.1-P	Field mustard	plastid	35.87	32.82
Bra032187.1-P	Field mustard	cytosol	25.72	31.73
Bra008815.1-P	Field mustard	cytosol	31.64	30.81
Bra005737.1-P	Field mustard	cytosol	30.63	30.78
Bra036858.1-P	Field mustard	cytosol	29.27	30.14
Bra012166.1-P	Field mustard	cytosol	28.6	30.02
Bra010771.1-P	Field mustard	cytosol, mitochondrion, nucleus	33.16	29.88
Bra037846.1-P	Field mustard	cytosol	26.57	29.85
Bra032391.1-P	Field mustard	cytosol, mitochondrion, nucleus	32.32	28.9
Bra011301.1-P	Field mustard	cytosol	27.92	28.6
Bra023423.1-P	Field mustard	cytosol	26.57	28.44
Bra024285.1-P	Field mustard	cytosol	34.69	28.28
Bra025440.1-P	Field mustard	cytosol	26.9	27.75
Bra010603.1-P	Field mustard	cytosol	26.9	27.65
Bra017837.1-P	Field mustard	cytosol	26.73	27.34
Bra012082.1-P	Field mustard	cytosol	30.46	26.91
Bra037773.1-P	Field mustard	cytosol	33.5	26.87
Bra039820.1-P	Field mustard	cytosol	28.09	26.48
Bra004064.1-P	Field mustard	cytosol	28.09	26.39
Bra009047.1-P	Field mustard	cytosol	27.92	26.19
Bra024915.1-P	Field mustard	cytosol	24.2	25.49
Bra025208.1-P	Field mustard	cytosol	24.37	25.09
Bra037606.1-P	Field mustard	cytosol	26.73	24.65
Bra010770.1-P	Field mustard	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	EnsemblPlantsGene:Bra018309	EnsemblPlants:Bra018309.1	EnsemblPlants:Bra018309.1-P
GO:GO:0003674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009638	GO:GO:0009987
InterPro:IPR000210	InterPro:IPR027356	UniProt:M4DP69	InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000
PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF17	InterPro:RPT2	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI0002547B95	SEG:seg	:	:

Description

AT2G30520 (E=5e-278) RPT2 | RPT2 (ROOT PHOTOTROPISM 2); protein binding

Coordinates

chrA05:+:7348124..7350919

Molecular Weight (calculated)

65479.3 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.205

Length

591 amino acids

Sequence
(BLAST)

001: MATEANNPIN MNSMSSSLQR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RIDLSDIPGG PEMFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAVVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FTDVVASMKQ RGLKPSSLAS AIITYTERSL RDLVRDHSGR GIKFSDPENN DSEERSQQRD LVESIVSLLP SDKGLFPINF LCSLLRCAVF LEASLASKNE
301: LEKRISVVLE HVTVDDLLIP SFTYDGERLL DLDSVRRIIS TFVEKEKNVG VFNGGDFNKG LFSASLQRVA RTVDSYLAEI ATYGELTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYEARLHASQ NKRLPVNIVL HALYYDQLKL RSGVEDKEGA VVVLPEAVAT RGQVKADASL
501: AKENEALRSE LMKMKMYVSD LQKSGGAAGA SSSNAPPSNK KSSKSTFFSS VSKKLGKLNP FRHGSKDTSN IDEDLAGVDI TKPRRRRFSI S

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.