Factsheet for TraesCS4D01G120400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1
TraesCS4A01G376500.1
TraesCS7A01G077700.1
TraesCS7A01G078000.2
TraesCS7D01G073300.1
TraesCS7D01G073400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT2G30520.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT2G30520.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT2G30520.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT2G30520.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT2G30520.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT2G30520.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT2G30520.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT2G30520.1	TraesCS3D01G231300.1	AT2G42580.1	19000166
AT2G30520.1	TraesCS4A01G376500.1	AT5G66280.1	21798944
AT2G30520.1	TraesCS7A01G077700.1	AT5G66280.1	21798944
AT2G30520.1	TraesCS7A01G078000.2	AT5G66280.1	21798944
AT2G30520.1	TraesCS7D01G073300.1	AT5G66280.1	21798944
AT2G30520.1	TraesCS7D01G073400.1	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G122300.1	Wheat	cytosol, plastid	97.37	97.37
TraesCS4A01G192900.1	Wheat	cytosol	94.57	96.09
HORVU4Hr1G023260.3	Barley	cytosol, plastid	95.1	86.74
Os12t0117400-01	Rice	plasma membrane	74.26	74.39
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	74.43	68.88
Zm00001d005051_P001	Maize	cytosol	69.35	68.63
OQU82741	Sorghum	plastid	70.75	67.11
Zm00001d023314_P001	Maize	cytosol	67.78	60.66
KRH30675	Soybean	cytosol	21.37	55.2
KXG22914	Sorghum	plastid	68.83	55.04
GSMUA_Achr11P...	Banana	cytosol, plastid	51.14	50.43
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	51.49	49.0
VIT_06s0004g08230.t01	Wine grape	mitochondrion	47.46	47.38
CDY10743	Canola	cytosol	47.64	46.82
CDY02075	Canola	cytosol	47.11	46.38
CDX84827	Canola	cytosol	45.88	46.37
Bra018309.1-P	Field mustard	cytosol, plastid	47.81	46.19
PGSC0003DMT400031245	Potato	cytosol	46.23	45.83
Solyc07g043130.2.1	Tomato	cytosol	46.23	45.83
Bra022805.1-P	Field mustard	cytosol	46.06	45.74
KRG98106	Soybean	cytosol	45.88	45.72
AT2G30520.1	Thale cress	cytosol	47.29	45.53
CDY23992	Canola	cytosol	45.01	45.49
KRH72843	Soybean	cytosol	45.71	45.0
KRH17211	Soybean	cytosol	45.01	44.39
KRH30676	Soybean	plastid	17.51	35.09
TraesCS4D01G255500.1	Wheat	cytosol	33.98	31.7
TraesCS5D01G463700.1	Wheat	plastid	32.22	28.18
TraesCS5D01G146000.1	Wheat	plastid	30.47	27.62
TraesCS5D01G389200.2	Wheat	cytosol, plastid	30.47	26.89
TraesCS2D01G507400.1	Wheat	nucleus	25.74	26.73
TraesCS7D01G306400.1	Wheat	cytosol	29.07	25.82
TraesCS5D01G413400.1	Wheat	cytosol	30.3	25.71
TraesCS5D01G385100.1	Wheat	plastid	27.67	24.84
TraesCS5D01G051100.1	Wheat	cytosol	27.32	24.68
TraesCS6D01G192300.1	Wheat	cytosol	26.97	24.56
TraesCS5D01G082800.1	Wheat	cytosol	26.09	23.95
TraesCS3D01G314000.1	Wheat	cytosol	27.32	23.93
TraesCS2D01G529600.1	Wheat	cytosol	26.62	23.38
TraesCS4D01G077700.3	Wheat	cytosol	25.92	23.34
TraesCS4D01G256700.1	Wheat	cytosol	24.52	23.1
TraesCS7D01G150700.2	Wheat	cytosol	26.44	23.09
TraesCS5D01G231300.1	Wheat	cytosol	25.57	22.92
TraesCS5D01G175800.1	Wheat	cytosol	22.94	22.55

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0008150
GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009638	InterPro:IPR000210	InterPro:IPR027356
InterPro:NPH3_dom	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF17
InterPro:RPT2	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	EnsemblPlantsGene:TraesCS4D01G120400	EnsemblPlants:TraesCS4D01G120400.1	SEG:seg

Description

No Description!

Coordinates

chr4D:-:101440512..101442923

Molecular Weight (calculated)

60705.5 Da

IEP (calculated)

8.679

GRAVY (calculated)

-0.076

Length

571 amino acids

Sequence
(BLAST)

001: MQASSRSSSM ERTSQWLSSQ DVQTDLVVRV AGAAFPLHKA VMVPKCGYIR KAVAVATRPD PAATVEIELD GLPGGADAFE KAARYCYGAN FEISARNAAA
101: LLCAAAFLDM QPADGGLARR VEEFLAQAGL RTLPNAIAVL RSCEGPLLTA AEELGVARRA ADAVALRICN EVLFPTRSPP EWWASELAAL SPVSFHRVFT
201: ALRCRRAGPE VLVAAATAYA ELLLADGKAS DHRALLESVV AVLPSADDAP LPAAFLCRLL HDAVTTEASA KTCRDLELRL AAVLDQATAG DLLAFAFDGA
301: GERVINTESL RRVIAAFVER ESGAGRNRRA SLSGAAALGA GALQKVAKMV DEVAAEIATD ESLPISKFVG VAGAVPKDAR ATHDCLYRAV DIYLKAHPEL
401: DEIEREKVCS VMDTLKLSYT ARLHASQNKR LPLQAVLSAL YYDQLKLRSA GVGHDDEDND ARSEAGSARM QAKADAALAR ENEALRSELA RMRAHMSSGM
501: QQSKGSGSRT AATAAVAGKK ASFFGSMSRT LSRLNPFRAG GGWSKDTSSI RESRGGAMNV VKPKRRRSSI S

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.