Factsheet for TraesCS2D01G507400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G197100.1
TraesCS2B01G224600.1
TraesCS2D01G205000.1
TraesCS4A01G275400.1
TraesCS4B01G038900.1
TraesCS4D01G035800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66560.1	TraesCS2A01G197100.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS2B01G224600.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS2D01G205000.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS4A01G275400.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS4B01G038900.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS4D01G035800.1	AT1G03140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G093880.1	Barley	cytosol	61.09	80.77
TraesCS1B01G298700.1	Wheat	cytosol, plastid	58.36	77.54
TraesCS5D01G389200.2	Wheat	cytosol, plastid	88.73	75.42
TraesCS5A01G379300.1	Wheat	cytosol, plastid	88.0	74.35
HORVU5Hr1G093850.15	Barley	mitochondrion	85.45	71.65
OQU91026	Sorghum	cytosol, nucleus, plastid	70.0	64.38
Os03t0738900-00	Rice	nucleus, plasma membrane, plastid	74.55	62.5
Zm00001d033941_P001	Maize	mitochondrion, plastid	70.55	61.49
GSMUA_Achr8P04840_001	Banana	cytosol	45.82	42.86
VIT_00s0207g00230.t01	Wine grape	cytosol	48.91	42.36
Solyc02g090070.2.1	Tomato	nucleus	47.27	39.94
CDY45241	Canola	cytosol	42.91	39.46
KRH08351	Soybean	cytosol	46.36	39.35
PGSC0003DMT400026008	Potato	cytosol	47.09	39.3
TraesCS5D01G413400.1	Wheat	cytosol	47.82	39.08
KRH28552	Soybean	cytosol	41.64	38.68
CDY30765	Canola	cytosol	43.45	37.7
CDX73781	Canola	cytosol	37.27	37.61
CDX77951	Canola	cytosol	37.45	37.59
AT3G50840.1	Thale cress	cytosol	38.55	37.26
AT5G66560.1	Thale cress	cytosol	44.73	36.83
KRH69999	Soybean	endoplasmic reticulum	45.45	36.76
Bra012082.1-P	Field mustard	cytosol	44.18	36.32
Bra036858.1-P	Field mustard	cytosol	37.82	36.24
KRH76914	Soybean	cytosol	32.73	35.29
TraesCS5D01G051100.1	Wheat	cytosol	36.91	32.12
TraesCS5D01G385100.1	Wheat	plastid	37.09	32.08
TraesCS7D01G306400.1	Wheat	cytosol	37.27	31.88
TraesCS2D01G529600.1	Wheat	cytosol	33.27	28.15
TraesCS3D01G314000.1	Wheat	cytosol	33.27	28.07
TraesCS5D01G146000.1	Wheat	plastid	31.45	27.46
TraesCS4D01G255500.1	Wheat	cytosol	30.36	27.29
TraesCS5D01G463700.1	Wheat	plastid	31.27	26.34
TraesCS4D01G120400.1	Wheat	cytosol, plastid	26.73	25.74
TraesCS6D01G192300.1	Wheat	cytosol	28.73	25.2
TraesCS5D01G082800.1	Wheat	cytosol	26.0	22.99
TraesCS7D01G150700.2	Wheat	cytosol	26.55	22.32
TraesCS4D01G077700.3	Wheat	cytosol	25.64	22.24
TraesCS4D01G256700.1	Wheat	cytosol	24.0	21.78
TraesCS5D01G231300.1	Wheat	cytosol	24.73	21.35
TraesCS5D01G175800.1	Wheat	cytosol	22.36	21.17
GSMUA_Achr3P25690_001	Banana	nucleus	43.27	19.93

Protein Annotations

EnsemblPlants:TraesCS2D01G507400.1	EnsemblPlantsGene:TraesCS2D01G507400	InterPro:IPR027356	InterPro:NPH3_dom	ncoils:Coil	PANTHER:PTHR32370
PANTHER:PTHR32370:SF78	PFAM:PF03000	PFscan:PS51649	SEG:seg	MapMan:35.1	:

Description

No Description!

Coordinates

chr2D:-:601055705..601057619

Molecular Weight (calculated)

60301.7 Da

IEP (calculated)

8.851

GRAVY (calculated)

-0.440

Length

550 amino acids

Sequence
(BLAST)

001: MSKSRKISRM LAEQDEQRPA SQRRRRRGSS EGNVEEHAAA ETEIEEAEEE DGDEEQQHLT PWNVAPLRCA AEYLEMTEEH SEDNLAARTE AYLSQSVLRH
101: PGEATKALKS CEELLPHAEE LGIAARCVDA IAARSSATSR SWFGDLAVLG LHMYKRVMAA MAARKDVRTE ALEGCLVSYA KATLPGLSRS MRWRRASAPV
201: SSEVEQRDLL EVVVASLPAD KGSGSVVTAK FLFALLRTAH ILRASDAARA AIERKAATQL EQATVEDVLI PSYSGAAETL YDVDYVERVA RHFLPAITEE
301: EAAARTTASR PSAVAMVQVG KLVDNYLAEV ASDANLKPTK FCELTLAMPD HARIYDDGVY RAVDIYLKAH PRLTAEERDR VCGVVDCRKL TVEACTHAAQ
401: NERLLLRAVL QVLFSEQLQL RRAIKGTLLA STASPRARHP NPHPQRPAAA VRHAAGPSEA WRTTMVQESQ TLRVDMDGMR SRVQGLEREC SSMRRAIKKI
501: DGGGVASKAA AARTRPPRRA GGRGTGASSA RRCATRRRAT RSCPGRPGWG

Best Arabidopsis Sequence Match ( AT3G50840.2 )
(BLAST)

001: MSKSKKLHQL ITEQEQSKVY SHIKLENFPG GSEIFEMVIK ISYGFKVDIS VSTAVPLRCA AEYLEMTEEY SPENLISKTE KFLSEFVFTN VQESIKALKA
101: CESVSSLAES LCITEQCIDS IVFQASSTDP SSFYGWPINN GGIFTVDRKK QSKDSKTELW FEDLTELSFP IFRRVILSMK SSVLSPEIVE RSLLTYAKKH
201: IPGISRSSSA SSSSSSSSTT IASENQQREL LETITSDLPL TATTTRSLFG LLRAAIILNA SENCRKFLEK KIGSNLEKAT LDDLLIPSYS YLNETLYDID
301: LVERLLRRFL ENVAVSSSSL TVVGRLIDGV LGEIASDANL KPEQFYNLAV LLPVQARVYD DGLYRAVDIY FKTHSWILEE EKEKICSVMD CRKLTVEGCT
401: HAAQNERLPL RAVVQVLFLE QLQLRQVITG TLLTEEDGDK TVVDLGRWKE AVKENQVLRL DMDTMRTRVN QLEKECLYLK KVIAKIDKES LLKAKHGAGK
501: WSIGKKFGCK FSAQVCDSQE ATMVDRRSRR FLS

Arabidopsis Description

BTB/POZ domain-containing protein At3g50840 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPQ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.