Factsheet for TraesCS5D01G389200.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G197100.1
TraesCS2B01G224600.1
TraesCS2D01G205000.1
TraesCS4A01G275400.1
TraesCS4B01G038900.1
TraesCS4D01G035800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66560.1	TraesCS2A01G197100.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS2B01G224600.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS2D01G205000.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS4A01G275400.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS4B01G038900.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS4D01G035800.1	AT1G03140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G379300.1	Wheat	cytosol, plastid	95.21	94.62
TraesCS5B01G383100.1	Wheat	plastid	94.9	93.88
HORVU5Hr1G093880.1	Barley	cytosol	59.97	93.27
HORVU5Hr1G093850.15	Barley	mitochondrion	91.04	89.79
TraesCS2D01G507400.1	Wheat	nucleus	75.42	88.73
OQU91026	Sorghum	cytosol, nucleus, plastid	73.42	79.43
Zm00001d033941_P001	Maize	mitochondrion, plastid	77.13	79.08
Os03t0738900-00	Rice	nucleus, plasma membrane, plastid	79.29	78.2
VIT_00s0207g00230.t01	Wine grape	cytosol	51.62	52.6
GSMUA_Achr8P04840_001	Banana	cytosol	47.3	52.04
CDY45241	Canola	cytosol	45.6	49.33
Solyc02g090070.2.1	Tomato	nucleus	49.61	49.31
PGSC0003DMT400026008	Potato	cytosol	49.46	48.56
TraesCS5D01G413400.1	Wheat	cytosol	50.39	48.44
KRH08351	Soybean	cytosol	48.07	47.99
KRH28552	Soybean	cytosol	43.89	47.97
CDY30765	Canola	cytosol	46.06	47.0
CDX73781	Canola	cytosol	39.26	46.61
CDX77951	Canola	cytosol	39.41	46.53
AT3G50840.1	Thale cress	cytosol	40.19	45.69
KRH76914	Soybean	cytosol	36.01	45.69
KRH69999	Soybean	endoplasmic reticulum	47.6	45.29
Bra012082.1-P	Field mustard	cytosol	46.68	45.14
AT5G66560.1	Thale cress	cytosol	46.52	45.06
Bra036858.1-P	Field mustard	cytosol	39.88	44.95
TraesCS5D01G385100.1	Wheat	plastid	40.03	40.72
TraesCS5D01G051100.1	Wheat	cytosol	39.41	40.35
TraesCS7D01G306400.1	Wheat	cytosol	38.79	39.04
TraesCS3D01G314000.1	Wheat	cytosol	35.09	34.82
TraesCS2D01G529600.1	Wheat	cytosol	34.31	34.15
TraesCS5D01G463700.1	Wheat	plastid	32.77	32.47
TraesCS5D01G146000.1	Wheat	plastid	31.07	31.9
TraesCS4D01G255500.1	Wheat	cytosol	29.37	31.05
TraesCS4D01G120400.1	Wheat	cytosol, plastid	26.89	30.47
TraesCS6D01G192300.1	Wheat	cytosol	28.9	29.82
TraesCS5D01G082800.1	Wheat	cytosol	27.2	28.3
TraesCS7D01G150700.2	Wheat	cytosol	28.28	27.98
TraesCS4D01G077700.3	Wheat	cytosol	27.05	27.6
TraesCS4D01G256700.1	Wheat	cytosol	25.5	27.23
TraesCS5D01G231300.1	Wheat	cytosol	25.5	25.9
TraesCS5D01G175800.1	Wheat	cytosol	23.03	25.65
GSMUA_Achr3P25690_001	Banana	nucleus	43.74	23.7

Protein Annotations

EnsemblPlants:TraesCS5D01G389200.2	EnsemblPlantsGene:TraesCS5D01G389200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:BTB/POZ_dom
InterPro:IPR000210	InterPro:IPR027356	InterPro:NPH3_dom	InterPro:SKP1/BTB/POZ_sf	ncoils:Coil	PANTHER:PTHR32370
PANTHER:PTHR32370:SF78	PFAM:PF03000	PFscan:PS51649	SEG:seg	SMART:SM00225	SUPFAM:SSF54695
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:458630910..458633186

Molecular Weight (calculated)

70604.4 Da

IEP (calculated)

6.258

GRAVY (calculated)

-0.369

Length

647 amino acids

Sequence
(BLAST)

001: MSSSSMARHG PSRAGEAWFC TTGLPSDVVF EVQDMSFHLH KFPLMSKSRK ISRMLAEQDE QRPPGQPRRR RRGSSGGNAE EHAAAETEIE EAEEEDGDEE
101: QQQVSMEDGK SYRITFPDFP GGPGTFEAAA KFCYGVRVEL TPWNVAPLRC AAEYLEMTEE HSEDNLAARA EAYLSQAVLR HPGEATKALK SCEDLLPHAE
201: ELGIVARCVE AIAARSSATS RSWFGDLAVL GLHMYKRVMA AMAAREDVRT EALEGCLVSY AKATLPGLSR SMRWRRASAP VSSEVEQRDL LEAVVASLPA
301: DKGSGSVVTA KFLFALLRTA HILRASDAAR AAIERKAATQ LEQATVEDVL IPSYSGAAET LYDVDCVERV VRHFLAEEEV GEDEASSSAA ITEEEAAART
401: TASRPSAVAM TQVGKLVDNY LAEVASDANL KPAKFCELAL AMPDHARIYD DGVYRAVDIY LKAHPRLTTE ERDRVCGVVD CRKLTVEACT HAAQNERLPL
501: RAVLQVLFFE QLQLRRAITG TLLASTASPR ARHPQPQPAA AAVRHAAGPS EAWRTTTVQE SQTLRLDMDG MRTRVQGLER ECSSMRRAIK KIDGRGGTAS
601: PSSASSPDAA APAGWRSRYR CKFSTQVCDS QARDAVVSRA SRMGMSP

Best Arabidopsis Sequence Match ( AT1G30440.1 )
(BLAST)

001: MACMKLGSKS DAFQRQGQAW FCTTGLPSDI VVEVGEMSFH LHKFPLLSRS GVMERRIAEA SKEGDDKCLI EISDLPGGDK TFELVAKFCY GVKLELTASN
101: VVYLRCAAEH LEMTEEHGEG NLISQTETFF NQVVLKSWKD SIKALHSCDE VLEYADELNI TKKCIESLAM RASTDPNLFG WPVVEHGGPM QSPGGSVLWN
201: GISTGARPKH TSSDWWYEDA SMLSFPLFKR LITVMESRGI REDIIAGSLT YYTRKHLPGL KRRRGGPESS GRFSTPLGSG NVLSEEEQKN LLEEIQELLR
301: MQKGLVPTKF FVDMLRIAKI LKASPDCIAN LEKRIGMQLD QAALEDLVMP SFSHTMETLY DVDSVQRILD HFLGTDQIMP GGVGSPCSSV DDGNLIGSPQ
401: SITPMTAVAK LIDGYLAEVA PDVNLKLPKF QALAASIPEY ARLLDDGLYR AIDIYLKHHP WLAETERENL CRLLDCQKLS LEACTHAAQN ERLPLRIIVQ
501: VLFFEQLQLR TSVAGCFLVS DNLDGGSRQL RSGGYVGGPN EGGGGGGGWA TAVRENQVLK VGMDSMRMRV CELEKECSNM RQEIEKLGKT TKGGGSASNG
601: VGSKTWENVS KKLGFGFKLK SHQMCSAQEG SVSKSNNENV KIEKLKDVKE RRGKHKKASS ISSER

Arabidopsis Description

BTB/POZ domain-containing protein At1g30440 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9Q9]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.