Factsheet for TraesCS5D01G175800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G171100.1	Wheat	cytosol	96.73	97.91
TraesCS5B01G168600.3	Wheat	cytosol	97.25	94.17
HORVU0Hr1G012710.2	Barley	cytosol, plastid	79.17	79.04
Zm00001d019944_P001	Maize	cytosol	78.49	78.49
KXG35200	Sorghum	cytosol	75.73	76.12
Os09t0266600-01	Rice	cytosol	53.7	75.0
GSMUA_Achr3P12020_001	Banana	cytosol	54.91	58.42
GSMUA_Achr3P14590_001	Banana	cytosol	56.8	57.59
VIT_00s0194g00080.t01	Wine grape	cytosol	48.71	47.72
KRH01932	Soybean	cytosol	47.85	47.52
KRH51214	Soybean	cytosol	47.5	46.62
Bra024915.1-P	Field mustard	cytosol	44.75	46.35
CDY17704	Canola	cytosol	44.75	46.35
CDX77798	Canola	cytosol	44.58	46.17
KRH11633	Soybean	cytosol	46.64	44.94
KRH36642	Soybean	cytosol	46.13	44.74
AT5G47800.2	Thale cress	cytosol	43.72	37.8
KRH62777	Soybean	cytosol	19.97	36.83
TraesCS4D01G256700.1	Wheat	cytosol	35.97	34.49
TraesCS5D01G082800.1	Wheat	cytosol	36.32	33.92
KRG90163	Soybean	cytosol	27.88	33.75
TraesCS4D01G077700.3	Wheat	cytosol	36.32	33.28
TraesCS5D01G231300.1	Wheat	cytosol	34.25	31.24
TraesCS6D01G192300.1	Wheat	cytosol	33.56	31.1
TraesCS7D01G150700.2	Wheat	cytosol	34.42	30.58
TraesCS5D01G051100.1	Wheat	cytosol	30.46	28.01
TraesCS7D01G306400.1	Wheat	cytosol	30.98	27.99
TraesCS3D01G314000.1	Wheat	cytosol	29.78	26.53
TraesCS5D01G385100.1	Wheat	plastid	28.92	26.42
TraesCS2D01G529600.1	Wheat	cytosol	27.54	24.62
TraesCS4D01G255500.1	Wheat	cytosol	25.82	24.51
TraesCS5D01G463700.1	Wheat	plastid	26.33	23.43
TraesCS5D01G146000.1	Wheat	plastid	25.13	23.17
TraesCS5D01G389200.2	Wheat	cytosol, plastid	25.65	23.03
TraesCS4D01G120400.1	Wheat	cytosol, plastid	22.55	22.94
TraesCS5D01G413400.1	Wheat	cytosol	26.33	22.73
TraesCS2D01G507400.1	Wheat	nucleus	21.17	22.36

Protein Annotations

EnsemblPlants:TraesCS5D01G175800.1	EnsemblPlantsGene:TraesCS5D01G175800	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:IPR027356	InterPro:NPH3_dom	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR32370
PANTHER:PTHR32370:SF19	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	SEG:seg	SUPFAM:SSF54695
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:275611944..275616115

Molecular Weight (calculated)

64251.8 Da

IEP (calculated)

7.949

GRAVY (calculated)

-0.228

Length

581 amino acids

Sequence
(BLAST)

001: MKYMKLGSKP DTFYTEQAVR VYLWLGRSVV SDIPADLIIH VNNTKYQLHK FPLLLKCGLL QRLCSDTEAD EQLPVPVALH DIPGGEEAFE ICAKFCYGIA
101: ISISASNFVP AALAARFLRM TEHVAKGNLV SKLDTFFESC VLHGWRDSIA ALQAAWRISG WSESRIVQPC VDSIVEKILL PPSQVAWSYT YTRPGYAKRP
201: HQSVPKDWWT EDISELDIEV FRSVVSTVRA TRMLPSPLIG EALHVYACKH LPDPLYTGGS ANGHASQSQS SSFTAAAAAA EEALAKQRRV LETVVTMIPG
301: DVGSVTGRFL LRLLRVANYV GASSSTRAQL IRQAGSQLDE AKAVDLLIPL PSDPQAYDVG AAEAVLEYFL AQFQRPAAPD ERRRMSVAME KVVRIFDEYL
401: KTIALDSEFP IGKFIDLAEC LPGIARSDHD GLYRAVDTYL KEHPDLSKAD RKRLCRLIDC RKLSPDERAQ AVSNDRMPLR TIVQLLFVEQ ERTIGAGGSH
501: SVAPPDRASV DAVSRLAATG REDEAAAMDH RSDVHRPRRA GHEERAQGEA AAMTRSLSAS TKTAARKDRT VEERGSRLRN K

Best Arabidopsis Sequence Match ( AT5G47800.3 )
(BLAST)

001: MKFMKIGTKP DTFYTQEASR ILITDTPNDL VIRINNTTYH LHRSCLVPKC GLLRRLCTDL EESDTVTIEL NDIPGGADAF ELCAKFCYDI TINLSAHNLV
101: NALCASKFLR MSDSVDKGNL LPKLEAFFHS CILQGWKDSI VTLQSTTKLP EWCENLGIVR KCIDSIVEKI LTPTSEVSWS HTYTRPGYAK RQHHSVPRDW
201: WTEDISDLDL DLFRCVITAA RSTFTLPPQL IGEALHVYTC RWLPYFKSNS HSGFSVKENE AALERHRRLV NTVVNMIPAD KGSVSEGFLL RLVSIASYVR
301: ASLTTKTELI RKSSLQLEEA TLEDLLLPSH SSSHLHRYDT DLVATVLESF LMLWRRQSSA HLSSNNTQLL HSIRKVAKLI DSYLQAVAQD VHMPVSKFVS
401: LSEAVPDIAR QSHDRLYKAI NIFLKVHPEI SKEEKKRLCR SLDCQKLSAQ VRAHAVKNER MPLRTVVQAL FFDQESGSKG ASSRSESQEL FTRGKETPTD
501: EHSMMHKLHL GPASTGKAKN VLEEGCKRGE EKTRSSTDPK KIVWKGTGSE HKHHISRDR

Arabidopsis Description

Phototropic-responsive NPH3 family protein [Source:TAIR;Acc:AT5G47800]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.