Factsheet for GSMUA_Achr3P12020_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P14590_001	Banana	cytosol	75.09	71.55
TraesCS5A01G171100.1	Wheat	cytosol	58.42	55.57
TraesCS5D01G175800.1	Wheat	cytosol	58.42	54.91
Zm00001d019944_P001	Maize	cytosol	58.06	54.56
KXG35200	Sorghum	cytosol	57.33	54.15
TraesCS5B01G168600.3	Wheat	cytosol	58.79	53.5
Os09t0266600-01	Rice	cytosol	37.55	49.28
VIT_00s0194g00080.t01	Wine grape	cytosol	51.28	47.22
HORVU0Hr1G012710.2	Barley	cytosol, plastid	50.18	47.08
KRH01932	Soybean	cytosol	50.0	46.67
KRH51214	Soybean	cytosol	50.0	46.11
Bra024915.1-P	Field mustard	cytosol	46.34	45.1
CDX77798	Canola	cytosol	46.34	45.1
CDY17704	Canola	cytosol	46.34	45.1
KRH36642	Soybean	cytosol	47.8	43.57
KRH11633	Soybean	cytosol	47.8	43.28
KRH62777	Soybean	cytosol	22.89	39.68
AT5G47800.2	Thale cress	cytosol	45.97	37.35
GSMUA_Achr10P...	Banana	cytosol	38.46	37.3
GSMUA_Achr4P01950_001	Banana	cytosol	27.84	37.25
GSMUA_Achr4P10900_001	Banana	cytosol	37.36	36.62
GSMUA_Achr8P16390_001	Banana	cytosol	34.62	36.21
GSMUA_Achr5P01710_001	Banana	cytosol	36.26	34.08
GSMUA_Achr3P04740_001	Banana	cytosol	36.08	33.39
KRG90163	Soybean	cytosol	28.94	32.92
GSMUA_Achr10P...	Banana	cytosol	33.88	32.51
GSMUA_Achr7P26250_001	Banana	cytosol	36.26	31.73
GSMUA_Achr6P30010_001	Banana	cytosol	30.77	30.66
GSMUA_Achr3P20380_001	Banana	cytosol	32.23	30.61
GSMUA_Achr2P13430_001	Banana	cytosol	36.63	29.81
GSMUA_Achr5P02440_001	Banana	cytosol	30.77	29.32
GSMUA_Achr9P19480_001	Banana	extracellular, plasma membrane	26.92	29.11
GSMUA_AchrUn_...	Banana	cytosol	22.53	28.94
GSMUA_Achr2P02890_001	Banana	cytosol	29.49	28.55
GSMUA_Achr9P26110_001	Banana	cytosol	31.14	28.05
GSMUA_Achr6P27970_001	Banana	cytosol	26.37	27.85
GSMUA_Achr4P31620_001	Banana	cytosol	30.22	27.64
GSMUA_Achr5P00550_001	Banana	cytosol	30.59	26.55
GSMUA_Achr1P21440_001	Banana	cytosol	29.49	26.48
GSMUA_Achr7P21950_001	Banana	plastid	27.29	26.47
GSMUA_Achr10P...	Banana	cytosol	26.19	25.86
GSMUA_Achr8P30170_001	Banana	plastid	26.19	25.63
GSMUA_Achr1P11260_001	Banana	plastid	26.37	25.13
GSMUA_Achr7P26300_001	Banana	cytosol	26.92	24.83
GSMUA_Achr8P04840_001	Banana	cytosol	26.56	24.66
GSMUA_Achr9P26440_001	Banana	cytosol	25.64	24.05
GSMUA_Achr11P...	Banana	cytosol, plastid	23.81	22.45
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	24.36	22.17
GSMUA_Achr3P25690_001	Banana	nucleus	23.63	10.8

Protein Annotations

EnsemblPlants:GSMUA_Achr3P12020_001	EnsemblPlants:GSMUA_Achr3T12020_001	EnsemblPlantsGene:GSMUA_Achr3G12020_001	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:IPR027356	InterPro:NPH3_dom	InterPro:SKP1/BTB/POZ_sf
PANTHER:PTHR32370	PANTHER:PTHR32370:SF19	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	SEG:seg
SUPFAM:SSF54695	UniParc:UPI000296B42B	UniProt:M0SDW9	MapMan:35.1	:	:

Description

Putative Coleoptile phototropism protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G12020_001]

Coordinates

chr3:-:8913651..8916207

Molecular Weight (calculated)

60663.1 Da

IEP (calculated)

8.313

GRAVY (calculated)

-0.271

Length

546 amino acids

Sequence
(BLAST)

001: MKYMKLGIKP DTFYTGEATR SVLSDVPTDL IIHVNNTKYL LHKFPLLPKC GFIQRLCSDT DTDAGQAIPV ALHDVPGGEE AFELCAKFCY GITINLSAHN
101: FVAALSAAKF LRMTESVAKG NFIAKLEYFF ESCVLQGWKD SIMVLQSMWR QSGWSDEHRI VQPCMDSVIE KILIHPSQVT WSYTYTRPGY KKQRHGVPKD
201: WWTEDVSDLD LDLFRSIIST VRSTKKLPSA LVGEALHVYA CRHIPSPLDF QAQSSVARTD ETPSKHRRVL EAIVSMIPTE TASVSGSFLL RLLKLTIYVG
301: ASPSTKAELV RRSGRQLDEV TASDLLLPAG TNAQSHDTGM VKAILESFLL QLRRPMPREE TERMTMSMTK VGRTYDSYLR IIASEGGLPA SEFIKLAESL
401: PQVSREQHDG LYEAIDTYLK EHPELSKAER KRLCRMIDCR KLSPEALADA IANDQLPLRT IVQLLFVEQE RVGGGGGGQH APVISSKTEV SVAKIAQDEV
501: TSSRNGPEGG HRAEKTKVVP SPSESKIAEE ERKVKAGGLA TKLKTK

Best Arabidopsis Sequence Match ( AT5G47800.3 )
(BLAST)

001: MKFMKIGTKP DTFYTQEASR ILITDTPNDL VIRINNTTYH LHRSCLVPKC GLLRRLCTDL EESDTVTIEL NDIPGGADAF ELCAKFCYDI TINLSAHNLV
101: NALCASKFLR MSDSVDKGNL LPKLEAFFHS CILQGWKDSI VTLQSTTKLP EWCENLGIVR KCIDSIVEKI LTPTSEVSWS HTYTRPGYAK RQHHSVPRDW
201: WTEDISDLDL DLFRCVITAA RSTFTLPPQL IGEALHVYTC RWLPYFKSNS HSGFSVKENE AALERHRRLV NTVVNMIPAD KGSVSEGFLL RLVSIASYVR
301: ASLTTKTELI RKSSLQLEEA TLEDLLLPSH SSSHLHRYDT DLVATVLESF LMLWRRQSSA HLSSNNTQLL HSIRKVAKLI DSYLQAVAQD VHMPVSKFVS
401: LSEAVPDIAR QSHDRLYKAI NIFLKVHPEI SKEEKKRLCR SLDCQKLSAQ VRAHAVKNER MPLRTVVQAL FFDQESGSKG ASSRSESQEL FTRGKETPTD
501: EHSMMHKLHL GPASTGKAKN VLEEGCKRGE EKTRSSTDPK KIVWKGTGSE HKHHISRDR

Arabidopsis Description

Phototropic-responsive NPH3 family protein [Source:TAIR;Acc:AT5G47800]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.