Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024915.1-P | Field mustard | cytosol | 72.62 | 86.99 |
| CDY17704 | Canola | cytosol | 72.62 | 86.99 |
| CDX77798 | Canola | cytosol | 72.62 | 86.99 |
| KRH01932 | Soybean | cytosol | 49.7 | 57.09 |
| VIT_00s0194g00080.t01 | Wine grape | cytosol | 49.4 | 55.99 |
| KRH51214 | Soybean | cytosol | 49.11 | 55.74 |
| KRH36642 | Soybean | cytosol | 47.47 | 53.26 |
| KRH11633 | Soybean | cytosol | 47.47 | 52.9 |
| KRH62777 | Soybean | cytosol | 22.62 | 48.25 |
| GSMUA_Achr3P12020_001 | Banana | cytosol | 37.35 | 45.97 |
| TraesCS5A01G171100.1 | Wheat | cytosol | 38.1 | 44.6 |
| Zm00001d019944_P001 | Maize | cytosol | 38.54 | 44.58 |
| GSMUA_Achr3P14590_001 | Banana | cytosol | 37.35 | 43.8 |
| TraesCS5D01G175800.1 | Wheat | cytosol | 37.8 | 43.72 |
| KXG35200 | Sorghum | cytosol | 37.5 | 43.6 |
| TraesCS5B01G168600.3 | Wheat | cytosol | 37.65 | 42.17 |
| KRG90163 | Soybean | cytosol | 29.91 | 41.88 |
| Os09t0266600-01 | Rice | cytosol | 25.6 | 41.35 |
| HORVU0Hr1G012710.2 | Barley | cytosol, plastid | 33.48 | 38.66 |
| AT2G23050.1 | Thale cress | cytosol | 26.93 | 37.63 |
| AT1G67900.2 | Thale cress | nucleus | 34.08 | 36.29 |
| AT3G26490.3 | Thale cress | cytosol | 29.76 | 34.01 |
| AT4G31820.1 | Thale cress | cytosol | 27.98 | 32.92 |
| AT5G67440.1 | Thale cress | cytosol | 28.27 | 32.82 |
| AT4G37590.1 | Thale cress | cytosol | 27.83 | 32.24 |
| AT2G14820.2 | Thale cress | cytosol | 29.61 | 31.39 |
| AT5G13600.1 | Thale cress | cytosol | 23.66 | 26.9 |
| AT5G03250.1 | Thale cress | cytosol | 23.66 | 26.86 |
| AT1G30440.1 | Thale cress | cytosol, mitochondrion, nucleus | 26.04 | 26.32 |
| AT5G64330.1 | Thale cress | cytosol | 28.87 | 26.01 |
| AT2G30520.1 | Thale cress | cytosol | 22.47 | 25.46 |
| AT3G49970.2 | Thale cress | extracellular | 19.49 | 25.44 |
| AT5G48800.1 | Thale cress | cytosol | 23.07 | 25.24 |
| AT3G50840.1 | Thale cress | cytosol | 20.83 | 24.6 |
| AT5G10250.2 | Thale cress | cytosol | 22.32 | 24.12 |
| AT5G66560.1 | Thale cress | cytosol | 23.81 | 23.95 |
| AT5G67385.1 | Thale cress | cytosol | 21.13 | 23.51 |
| AT1G03010.1 | Thale cress | cytosol | 22.17 | 23.5 |
| AT3G44820.1 | Thale cress | cytosol | 21.58 | 22.27 |
| AT2G47860.3 | Thale cress | plastid | 21.43 | 21.88 |
| AT3G08570.1 | Thale cress | plastid | 20.09 | 21.88 |
| AT3G08660.1 | Thale cress | plastid | 18.45 | 21.31 |
Protein Annotations
| Gene3D:3.30.710.10 | MapMan:35.1 | EntrezGene:834831 | UniProt:A0A1P8B9X9 | ProteinID:ANM68403.1 | ArrayExpress:AT5G47800 |
| EnsemblPlantsGene:AT5G47800 | RefSeq:AT5G47800 | TAIR:AT5G47800 | RefSeq:AT5G47800-TAIR-G | EnsemblPlants:AT5G47800.2 | Unigene:At.29878 |
| InterPro:BTB/POZ_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000210 | InterPro:IPR027356 |
| InterPro:NPH3_dom | RefSeq:NP_001330162.1 | PFAM:PF00651 | PFAM:PF03000 | PFscan:PS50097 | PFscan:PS51649 |
| PANTHER:PTHR32370 | PANTHER:PTHR32370:SF19 | InterPro:SKP1/BTB/POZ_sf | SUPFAM:SSF54695 | UniParc:UPI00084901C3 | SEG:seg |
Description
Phototropic-responsive NPH3 family protein [Source:TAIR;Acc:AT5G47800]
Coordinates
chr5:+:19353532..19356300
Molecular Weight (calculated)
76091.8 Da
IEP (calculated)
8.519
GRAVY (calculated)
-0.373
Length
672 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRNSLKHYL GTYDKYVSEP TFLALIFKPN KYEGNTYQTP FGDLSPCGEQ QVTRPGPLLP FNSLSLLGFN FTNTLCQFDH YHFHISLSSP SSSSSSSSLI
101: STFEHTSFHE KSRMKFMKIG TKPDTFYTQE ASRILITDTP NDLVIRINNT TYHLHRSCLV PKCGLLRRLC TDLEESDTVT IELNDIPGGA DAFELCAKFC
201: YDITINLSAH NLVNALCASK FLRMSDSVDK GNLLPKLEAF FHSCILQGWK DSIVTLQSTT KLPEWCENLG IVRKCIDSIV EKILTPTSEV SWSHTYTRPG
301: YAKRQHHSVP RDWWTEDISD LDLDLFRCVI TAARSTFTLP PQLIGEALHV YTCRWLPYFK SNSHSGFSVK ENEAALERHR RLVNTVVNMI PADKGSVSEG
401: FLLRLVSIAS YVRASLTTKT ELIRKSSLQL EEATLEDLLL PSHSSSHLHR YDTDLVATVL ESFLMLWRRQ SSAHLSSNNT QLLHSIRKVA KLIDSYLQAV
501: AQDVHMPVSK FVSLSEAVPD IARQSHDRLY KAINIFLKVH PEISKEEKKR LCRSLDCQKL SAQVRAHAVK NERMPLRTVV QALFFDQESG SKGASSRSES
601: QELFTRGKET PTDEHSMMHK LHLGPASTGK AKNVLEEGCK RGEEKTRSST DPKKIVWKGT GSEHKHHISR DR
101: STFEHTSFHE KSRMKFMKIG TKPDTFYTQE ASRILITDTP NDLVIRINNT TYHLHRSCLV PKCGLLRRLC TDLEESDTVT IELNDIPGGA DAFELCAKFC
201: YDITINLSAH NLVNALCASK FLRMSDSVDK GNLLPKLEAF FHSCILQGWK DSIVTLQSTT KLPEWCENLG IVRKCIDSIV EKILTPTSEV SWSHTYTRPG
301: YAKRQHHSVP RDWWTEDISD LDLDLFRCVI TAARSTFTLP PQLIGEALHV YTCRWLPYFK SNSHSGFSVK ENEAALERHR RLVNTVVNMI PADKGSVSEG
401: FLLRLVSIAS YVRASLTTKT ELIRKSSLQL EEATLEDLLL PSHSSSHLHR YDTDLVATVL ESFLMLWRRQ SSAHLSSNNT QLLHSIRKVA KLIDSYLQAV
501: AQDVHMPVSK FVSLSEAVPD IARQSHDRLY KAINIFLKVH PEISKEEKKR LCRSLDCQKL SAQVRAHAVK NERMPLRTVV QALFFDQESG SKGASSRSES
601: QELFTRGKET PTDEHSMMHK LHLGPASTGK AKNVLEEGCK RGEEKTRSST DPKKIVWKGT GSEHKHHISR DR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.