Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86278 | Canola | cytosol | 94.3 | 93.39 |
| Bra037460.1-P | Field mustard | cytosol | 94.14 | 93.23 |
| CDX85365 | Canola | cytosol | 93.97 | 93.06 |
| VIT_07s0005g06300.t01 | Wine grape | cytosol | 79.15 | 78.9 |
| KRH66064 | Soybean | extracellular | 76.55 | 76.67 |
| Solyc09g061250.2.1 | Tomato | cytosol | 74.76 | 75.62 |
| PGSC0003DMT400003100 | Potato | cytosol | 73.62 | 75.46 |
| PGSC0003DMT400045508 | Potato | cytosol | 73.94 | 74.79 |
| KRG99570 | Soybean | cytosol, endoplasmic reticulum, nucleus | 77.69 | 70.77 |
| GSMUA_Achr6P27970_001 | Banana | cytosol | 56.51 | 67.12 |
| AT3G08570.1 | Thale cress | plastid | 44.3 | 44.08 |
| AT3G08660.1 | Thale cress | plastid | 41.04 | 43.3 |
| AT1G03010.1 | Thale cress | cytosol | 44.63 | 43.22 |
| AT5G67385.1 | Thale cress | cytosol | 40.88 | 41.56 |
| AT3G49970.2 | Thale cress | extracellular | 34.04 | 40.58 |
| AT2G47860.3 | Thale cress | plastid | 42.18 | 39.36 |
| AT2G30520.1 | Thale cress | cytosol | 35.5 | 36.76 |
| AT5G03250.1 | Thale cress | cytosol | 33.88 | 35.14 |
| AT1G30440.1 | Thale cress | cytosol, mitochondrion, nucleus | 37.62 | 34.74 |
| AT5G13600.1 | Thale cress | cytosol | 33.06 | 34.35 |
| AT3G50840.1 | Thale cress | cytosol | 31.76 | 34.27 |
| AT2G23050.1 | Thale cress | cytosol | 25.9 | 33.06 |
| AT5G66560.1 | Thale cress | cytosol | 34.53 | 31.74 |
| AT1G67900.2 | Thale cress | nucleus | 31.43 | 30.59 |
| AT4G31820.1 | Thale cress | cytosol | 28.18 | 30.3 |
| AT5G67440.1 | Thale cress | cytosol | 28.5 | 30.22 |
| AT3G44820.1 | Thale cress | cytosol | 31.76 | 29.95 |
| AT4G37590.1 | Thale cress | cytosol | 28.01 | 29.66 |
| AT3G26490.3 | Thale cress | cytosol | 28.18 | 29.42 |
| AT2G14820.2 | Thale cress | cytosol | 29.97 | 29.02 |
| AT5G64330.1 | Thale cress | cytosol | 34.85 | 28.69 |
| AT5G10250.2 | Thale cress | cytosol | 28.34 | 27.97 |
| AT5G47800.2 | Thale cress | cytosol | 25.24 | 23.07 |
Protein Annotations
| Gene3D:3.30.710.10 | MapMan:35.1 | EntrezGene:834938 | UniProt:A0A178U984 | ProteinID:AED95726.1 | EMBL:AK117251 |
| ArrayExpress:AT5G48800 | EnsemblPlantsGene:AT5G48800 | RefSeq:AT5G48800 | TAIR:AT5G48800 | RefSeq:AT5G48800-TAIR-G | EnsemblPlants:AT5G48800.1 |
| TAIR:AT5G48800.1 | ProteinID:BAB09433.1 | InterPro:BTB/POZ_dom | EMBL:BX830207 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016567 | GO:GO:0019538 |
| InterPro:IPR000210 | InterPro:IPR027356 | InterPro:NPH3_dom | RefSeq:NP_199691.1 | ProteinID:OAO90250.1 | PFAM:PF00651 |
| PFAM:PF03000 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50097 | PFscan:PS51649 | PANTHER:PTHR32370 |
| PANTHER:PTHR32370:SF21 | UniProt:Q9FKB6 | InterPro:SKP1/BTB/POZ_sf | SUPFAM:SSF54695 | UniParc:UPI00000A6FD8 | SEG:seg |
Description
BTB/POZ domain-containing protein At5g48800 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKB6]
Coordinates
chr5:+:19786465..19789129
Molecular Weight (calculated)
69553.0 Da
IEP (calculated)
6.949
GRAVY (calculated)
-0.385
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKHHHQHLL LQHHQHLHHH QKLSLAKSSR QSCSEWIFRD VPSDITIEVN GGNFALHKFP LVSRSGRIRR IVAEHRDSDI SKVELLNLPG GAETFELAAK
101: FCYGINFEIT SSNVAQLFCV SDYLEMTEEY SKDNLASRTE EYLESIVCKN LEMCVQVLKQ SEILLPLADE LNIIGRCIDA IASKACAEQI ASSFSRLEYS
201: SSGRLHMSRQ VKSSGDGGDW WIEDLSVLRI DLYQRVMNAM KCRGVRPESI GASLVSYAER ELTKRSEHEQ TIVETIVTLL PVENLVVPIS FLFGLLRRAV
301: ILDTSVSCRL DLERRLGSQL DMATLDDLLI PSFRHAGDTL FDIDTVHRIL VNFSQQGGDD SEDEESVFEC DSPHSPSQTA MFKVAKLVDS YLAEIAPDAN
401: LDLSKFLLIA EALPPHARTL HDGLYRAIDL YLKAHQGLSD SDKKKLSKLI DFQKLSQEAG AHAAQNERLP LQSIVQVLYF EQLKLRSSLC SSYSDEEPKP
501: KQQQQQSWRI NSGALSATMS PKDNYASLRR ENRELKLELA RLRMRLNDLE KEHICMKRDM QRSHSRKFMS SFSKKMGKLS FFGHSSSRGS SSPSKQSFRT
601: DSKVLMERTC ASTD
101: FCYGINFEIT SSNVAQLFCV SDYLEMTEEY SKDNLASRTE EYLESIVCKN LEMCVQVLKQ SEILLPLADE LNIIGRCIDA IASKACAEQI ASSFSRLEYS
201: SSGRLHMSRQ VKSSGDGGDW WIEDLSVLRI DLYQRVMNAM KCRGVRPESI GASLVSYAER ELTKRSEHEQ TIVETIVTLL PVENLVVPIS FLFGLLRRAV
301: ILDTSVSCRL DLERRLGSQL DMATLDDLLI PSFRHAGDTL FDIDTVHRIL VNFSQQGGDD SEDEESVFEC DSPHSPSQTA MFKVAKLVDS YLAEIAPDAN
401: LDLSKFLLIA EALPPHARTL HDGLYRAIDL YLKAHQGLSD SDKKKLSKLI DFQKLSQEAG AHAAQNERLP LQSIVQVLYF EQLKLRSSLC SSYSDEEPKP
501: KQQQQQSWRI NSGALSATMS PKDNYASLRR ENRELKLELA RLRMRLNDLE KEHICMKRDM QRSHSRKFMS SFSKKMGKLS FFGHSSSRGS SSPSKQSFRT
601: DSKVLMERTC ASTD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.