Factsheet for PGSC0003DMT400003100

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045508	Potato	cytosol	83.97	82.87
VIT_07s0005g06300.t01	Wine grape	cytosol	80.8	78.57
KRH66064	Soybean	extracellular	79.13	77.32
CDX85365	Canola	cytosol	76.63	74.03
CDX86278	Canola	cytosol	76.46	73.87
Bra037460.1-P	Field mustard	cytosol	76.29	73.71
AT5G48800.1	Thale cress	cytosol	75.46	73.62
KRG99570	Soybean	cytosol, endoplasmic reticulum, nucleus	80.3	71.36
GSMUA_Achr6P27970_001	Banana	cytosol	56.93	65.96
PGSC0003DMT400010359	Potato	cytosol	50.08	51.9
PGSC0003DMT400029528	Potato	cytosol	37.56	44.2
PGSC0003DMT400033866	Potato	cytosol	38.73	38.6
PGSC0003DMT400031245	Potato	cytosol	36.06	37.5
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	36.73	34.98
PGSC0003DMT400093531	Potato	cytosol	31.39	34.94
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	35.06	34.43
PGSC0003DMT400026008	Potato	cytosol	36.89	33.54
PGSC0003DMT400001154	Potato	cytosol	34.56	32.81
PGSC0003DMT400083737	Potato	cytosol	34.72	31.56
PGSC0003DMT400064174	Potato	cytosol	33.06	31.53
PGSC0003DMT400006173	Potato	cytosol	35.56	31.51
PGSC0003DMT400066161	Potato	cytosol	32.22	30.83
PGSC0003DMT400038537	Potato	cytosol	32.22	30.78
PGSC0003DMT400047866	Potato	cytosol	31.72	30.25
PGSC0003DMT400013928	Potato	cytosol	30.72	30.16
PGSC0003DMT400022573	Potato	cytosol	30.72	29.92
PGSC0003DMT400018688	Potato	cytosol	30.55	29.23
PGSC0003DMT400073584	Potato	cytosol	24.87	26.9

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356	UniProt:M0ZL56	InterPro:NPH3_dom	PFAM:PF00651
PFAM:PF03000	EnsemblPlantsGene:PGSC0003DMG400001232	PGSC:PGSC0003DMG400001232	EnsemblPlants:PGSC0003DMT400003100	PFscan:PS50097	PFscan:PS51649
PANTHER:PTHR32370	PANTHER:PTHR32370:SF21	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI000296B47A	SEG:seg

Description

Phototropic-responsive NPH3 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001232]

Coordinates

chr6:+:2161794..2165615

Molecular Weight (calculated)

67924.2 Da

IEP (calculated)

7.117

GRAVY (calculated)

-0.340

Length

599 amino acids

Sequence
(BLAST)

001: MSMDKHHHHQ MPLTKSASRQ RYNEWVFRDV PSDITIEVDG AIFSLHKFPL VSRSGRIRRL VAEHRDSDIS RIELVSLPGG SESFELAAKF CYGVNFEITS
101: SNVAQLCCVS DYLEMSEDHS KNNLGSRAEE YLDSIVCKNL EMCVEVLRQS ENLLPLADEL KIVSRCIDAV ASKACVEQIA SSFSRLEYSS SGRLHMSKQA
201: NCEGDWWIED LSVLRIDLYQ RVITAMKFRG VRPESIAASL VSYAQKELIQ KSISGSKEKL VVETIVSLMP VEKFVVPLSF LFGLLRSAVM LDCNAACRLD
301: LERRIGSQLD IATLDDILIP SFRHAGDTMF DVDTVHRILV NFSQQEGDSD DEMEDVSVFE SDSPTATPSQ TALFKVSKLV DNYLAEIAPD ANLKLNKFIA
401: VAETLPAHAR SVHDGLYRAI DVYLKAHLTL SDPDKRRLCK SIDFQKLSQE AGAHAAQNER LPLQSIVQVL YFEQLRLRNA LFCSYPDDDI KPMHQSWRIN
501: SGALSAAMSP KDNYASLRRE NRELKLELAR MRMRLNDLEK DHVCMKRDMQ KSSSRRFMKS FSKRIGKKFN IFGHSSSRES TNSPSRHSER TDSKITDRT

Best Arabidopsis Sequence Match ( AT5G48800.1 )
(BLAST)

001: MDKHHHQHLL LQHHQHLHHH QKLSLAKSSR QSCSEWIFRD VPSDITIEVN GGNFALHKFP LVSRSGRIRR IVAEHRDSDI SKVELLNLPG GAETFELAAK
101: FCYGINFEIT SSNVAQLFCV SDYLEMTEEY SKDNLASRTE EYLESIVCKN LEMCVQVLKQ SEILLPLADE LNIIGRCIDA IASKACAEQI ASSFSRLEYS
201: SSGRLHMSRQ VKSSGDGGDW WIEDLSVLRI DLYQRVMNAM KCRGVRPESI GASLVSYAER ELTKRSEHEQ TIVETIVTLL PVENLVVPIS FLFGLLRRAV
301: ILDTSVSCRL DLERRLGSQL DMATLDDLLI PSFRHAGDTL FDIDTVHRIL VNFSQQGGDD SEDEESVFEC DSPHSPSQTA MFKVAKLVDS YLAEIAPDAN
401: LDLSKFLLIA EALPPHARTL HDGLYRAIDL YLKAHQGLSD SDKKKLSKLI DFQKLSQEAG AHAAQNERLP LQSIVQVLYF EQLKLRSSLC SSYSDEEPKP
501: KQQQQQSWRI NSGALSATMS PKDNYASLRR ENRELKLELA RLRMRLNDLE KEHICMKRDM QRSHSRKFMS SFSKKMGKLS FFGHSSSRGS SSPSKQSFRT
601: DSKVLMERTC ASTD

Arabidopsis Description

BTB/POZ domain-containing protein At5g48800 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.