Factsheet for PGSC0003DMT400010359

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g048980.2.1	Tomato	cytosol	87.54	95.83
VIT_08s0056g00610.t01	Wine grape	cytosol	75.95	72.92
KRH40661	Soybean	plastid	73.7	70.07
KRH00498	Soybean	cytosol, plastid	73.36	69.74
GSMUA_Achr7P21950_001	Banana	plastid	61.07	62.7
AT3G08570.1	Thale cress	plastid	63.15	59.16
CDY09561	Canola	cytosol	61.07	58.44
Bra032401.1-P	Field mustard	cytosol	60.55	57.66
CDY02305	Canola	cytosol	60.38	57.5
Bra001349.1-P	Field mustard	plastid	56.92	56.43
CDX73937	Canola	plastid	56.92	56.34
EES16593	Sorghum	plastid	62.46	56.06
TraesCS5D01G146000.1	Wheat	plastid	61.07	56.03
TraesCS5A01G146300.1	Wheat	plastid	61.07	56.03
AT3G08660.1	Thale cress	plastid	56.4	56.01
CDY00659	Canola	plastid	56.4	55.73
TraesCS5B01G145100.1	Wheat	plastid	60.73	55.71
HORVU5Hr1G046340.2	Barley	plastid	60.73	55.45
Os11t0118500-00	Rice	plastid	60.73	54.59
Os12t0117600-01	Rice	plastid	60.55	53.76
Zm00001d023313_P001	Maize	plastid	59.52	52.28
HORVU0Hr1G011770.1	Barley	cytosol	40.83	51.87
PGSC0003DMT400003100	Potato	cytosol	51.9	50.08
PGSC0003DMT400045508	Potato	cytosol	52.25	49.75
PGSC0003DMT400029528	Potato	cytosol	37.89	43.03
PGSC0003DMT400033866	Potato	cytosol	39.79	38.27
PGSC0003DMT400031245	Potato	cytosol	37.02	37.15
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	36.68	33.7
PGSC0003DMT400093531	Potato	cytosol	31.14	33.46
PGSC0003DMT400026008	Potato	cytosol	36.85	32.32
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	32.87	31.15
PGSC0003DMT400006173	Potato	cytosol	36.16	30.92
PGSC0003DMT400083737	Potato	cytosol	35.12	30.8
PGSC0003DMT400022573	Potato	cytosol	32.01	30.08
PGSC0003DMT400013928	Potato	cytosol	30.8	29.18
PGSC0003DMT400018688	Potato	cytosol	30.8	28.43
PGSC0003DMT400066161	Potato	cytosol	30.62	28.27
PGSC0003DMT400038537	Potato	cytosol	30.62	28.23
PGSC0003DMT400001154	Potato	cytosol	30.8	28.21
PGSC0003DMT400064174	Potato	cytosol	30.62	28.18
PGSC0003DMT400047866	Potato	cytosol	30.62	28.18
PGSC0003DMT400073584	Potato	cytosol	25.43	26.53

Protein Annotations

EntrezGene:102587772	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356	UniProt:M0ZXW9	InterPro:NPH3_dom
PFAM:PF00651	PFAM:PF03000	EnsemblPlantsGene:PGSC0003DMG400004044	PGSC:PGSC0003DMG400004044	EnsemblPlants:PGSC0003DMT400010359	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF5	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI000295BAB9
RefSeq:XP_006341291.1	SEG:seg	:	:	:	:

Description

Root phototropism protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004044]

Coordinates

chr9:+:19575292..19578314

Molecular Weight (calculated)

64679.3 Da

IEP (calculated)

6.170

GRAVY (calculated)

-0.108

Length

578 amino acids

Sequence
(BLAST)

001: MVSSQHSPFI TRTIFSDVAG DITIAVNGES FLLHKFPLVS LSGKIRKMVA DAKDPNLSEL NLTHVPGGPE TFELAAKFCY GMNFEITTTN VARLHCVAEY
101: LEMTEDYREE NLIARTETFL VEVVFPNLEK TVEVLSSCDD LLPIAEEVGI SDRCIDAIAR NACQEQLVSG LSRLDCDSGS LEHKEWWVED LSVLSIDFYG
201: RVIMAMGHVG LHIDSIIASL MHYAQVSLKG IGKPQIWNPA RAYPCKGEKG QKTIVETLVS LLPPEKSSSV PLNFLFGMLR IAIMVDAALA CRLEIERRIA
301: FRLEMVLLDD LLIPSVQTGD SLFDVDTVKR ILIHFLQRID QEENGDCGYE SENIDSPSHG SLLKVGRLID TYLAEIAPDP YLSLERFIAM ISVLPDYARV
401: IDDGLYRAID IYLKAHPMLS EHDCKKLCKF IDCQKLSQEA CNHAAQNDRL PVQMTVQVLY FEQLRLKNAL CGSCGDTQKM SSGVTSAAMS PRDTYASLRR
501: ENRELKLEIS RMRVRLSDLE KEQVFMKQGM IDKTGQGKTF LTSLSRGIGR FGIFGGPSHG KRRKSEGKTA RSRRYSVS

Best Arabidopsis Sequence Match ( AT3G08570.1 )
(BLAST)

001: MGIISDNAQS HSSSSAPAPS IFSSSFATRI FSDVAGDITI VVDGESFLLH KFPLVARCGK IRKMVAEMKE SSSNLSHTEL RDFPGGSKTF ELAMKFCYGI
101: NFEITISNVV AIRCAAGYLE MTEDFKEENL IARTETYLEQ VAFRSLEKSV EVLCSCETLY PQDIAETAHI PDRCVEAIAV NACREQLVLG LSRLNRGTES
201: GELKRGDSPE WWIEDLSALR IDYYARVVSA MARTGLRSES IITSLMHYAQ ESLKGIRNCK ERTKLDSGTF ENEQRNVLEA IVSLFPNDNV PLSFLFGMLR
301: VGITINVAIS CRLELERRIA QQLETVSLDD LLIPVVRDGD SMYDVDTVHR ILVCFLKKIE EEEEYDEDCC YENETENLTG SMCHSSLLKV GRIMDAYLAE
401: IAPDPCLSLH KFMALIEILP DYARVMDDGL YRAIDMFLKG HPSLNEQECK SLCKFIDTQK LSQEACNHVA QNDRLPMQMV VRVLYSEQLR MKNVMSGESG
501: EGLLLSSQKH SSENPSRAVS PRDTYASLRR ENRELKLEIS RVRVRLTELE KEQILMKQGM MEKSGHGGTL LTSLSKGIGR ISIFGGGPTE GKLRNANRKS
601: KSRLERKTVR SRPESMF

Arabidopsis Description

BTB/POZ domain-containing protein At3g08570 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.