Factsheet for PGSC0003DMT400013928

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g049660.1.1	Tomato	cytosol	95.57	95.42
PGSC0003DMT400066161	Potato	cytosol	78.36	76.36
VIT_03s0091g00680.t01	Wine grape	cytosol	69.02	67.47
KRH35678	Soybean	cytosol	66.89	65.38
KRG91101	Soybean	mitochondrion	63.77	61.75
CDY37223	Canola	cytosol	59.34	60.03
CDX81462	Canola	cytosol	59.18	59.87
CDY50369	Canola	cytosol	50.0	59.45
Bra039820.1-P	Field mustard	cytosol	60.82	59.17
PGSC0003DMT400064174	Potato	cytosol	60.33	58.6
AT2G14820.2	Thale cress	cytosol	60.82	58.52
PGSC0003DMT400038537	Potato	cytosol	58.52	56.94
GSMUA_Achr4P10900_001	Banana	cytosol	51.48	56.37
OQU93039	Sorghum	cytosol	55.41	55.5
GSMUA_Achr5P01710_001	Banana	cytosol	52.79	55.42
EER91236	Sorghum	cytosol	57.05	54.98
TraesCS4B01G078900.3	Wheat	cytosol	57.05	54.89
TraesCS4A01G236100.1	Wheat	cytosol	56.89	54.73
TraesCS4D01G077700.3	Wheat	cytosol	56.39	54.26
GSMUA_Achr10P...	Banana	cytosol	50.33	53.95
Os12t0583500-01	Rice	cytosol, plasma membrane	56.23	53.76
Os03t0205700-01	Rice	cytosol	53.28	53.72
Zm00001d033344_P001	Maize	cytosol	55.9	53.7
TraesCS4D01G256700.1	Wheat	cytosol	53.28	53.63
Zm00001d013741_P001	Maize	cytosol	56.39	53.5
Os03t0609800-02	Rice	cytosol	55.57	53.47
HORVU4Hr1G069760.10	Barley	cytosol	53.61	53.43
TraesCS4B01G256600.1	Wheat	cytosol	52.95	53.39
GSMUA_Achr7P26250_001	Banana	cytosol	54.43	53.21
TraesCS4A01G048200.1	Wheat	cytosol	52.79	53.14
Zm00001d048138_P007	Maize	cytosol	53.93	52.72
TraesCS5B01G076500.1	Wheat	cytosol	53.11	52.17
TraesCS5A01G070700.1	Wheat	cytosol	52.46	51.45
TraesCS5D01G082800.1	Wheat	cytosol	52.3	51.29
OQU79444	Sorghum	cytosol	54.1	51.24
Zm00001d030864_P001	Maize	cytosol	53.11	50.55
HORVU5Hr1G018480.1	Barley	cytosol	52.13	50.48
GSMUA_Achr2P13430_001	Banana	cytosol	52.79	47.99
PGSC0003DMT400022573	Potato	cytosol	46.89	46.5
PGSC0003DMT400047866	Potato	cytosol	44.1	42.83
Zm00001d028075_P010	Maize	endoplasmic reticulum	53.28	40.27
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	34.1	33.07
PGSC0003DMT400083737	Potato	cytosol	35.57	32.93
PGSC0003DMT400006173	Potato	cytosol	36.23	32.69
PGSC0003DMT400045508	Potato	cytosol	30.98	31.14
PGSC0003DMT400010359	Potato	cytosol	29.18	30.8
PGSC0003DMT400003100	Potato	cytosol	30.16	30.72
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	30.49	30.49
PGSC0003DMT400026008	Potato	cytosol	32.79	30.35
PGSC0003DMT400031245	Potato	cytosol	27.21	28.82
PGSC0003DMT400093531	Potato	cytosol	25.25	28.62
PGSC0003DMT400018688	Potato	cytosol	29.18	28.43
PGSC0003DMT400033866	Potato	cytosol	27.7	28.12
PGSC0003DMT400029528	Potato	cytosol	23.44	28.09
PGSC0003DMT400073584	Potato	cytosol	25.41	27.98
PGSC0003DMT400001154	Potato	cytosol	28.2	27.26

Protein Annotations

EntrezGene:102583100	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_NPY2	InterPro:BTB/POZ_dom	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009958	InterPro:IPR000210	InterPro:IPR027356	UniProt:M1A3H2	InterPro:NPH3_dom
PFAM:PF00651	PFAM:PF03000	EnsemblPlantsGene:PGSC0003DMG400005453	PGSC:PGSC0003DMG400005453	EnsemblPlants:PGSC0003DMT400013928	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF4	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695
UniParc:UPI0002959207	RefSeq:XP_006353967.1	SEG:seg	:	:	:

Description

Signal transducer [Source:PGSC_GENE;Acc:PGSC0003DMG400005453]

Coordinates

chr10:+:14750505..14753734

Molecular Weight (calculated)

67526.7 Da

IEP (calculated)

8.240

GRAVY (calculated)

-0.291

Length

610 amino acids

Sequence
(BLAST)

001: MKFMKLGSKP DTFQSDGKNV RYVASELDSD IVVSVGDVKF HLHKFPLLSK SAHLQKLVTN SSEGDGDEVH IHDVPGGPTA FEMCVKFCYG MTVTLNAYNV
101: IAARCAAEYL GMDETVEKGN LIYKIDVFLH STIFRSWKDS IIFLQTTKSR LHLCEEVKLI SHCTDAIASK TSIDVRKVDW SYTYNRTKIQ EENGSGPNSN
201: GIRSRVVPND WWVDDLCELE IDLYKRVMVN IKNKGIVSSE VIGEGIKAYT LRRFPGFSKG VCQFSDVSRS RSILDTVVCL LPAEKGSVSC SFLLKLLKAS
301: ISVDSGEKVK AELVKRIGQQ LEEASVNGLL IRATDGEATM YDVHVFHKIL ENFVVHNKDL KTQFEDGNEI PGVLSEASKL MVAKLVDGYL TEIAKDPNLP
401: LSTFVGLAEM VTDFPRPSHD SLYRAIDIYL KEHPGISKND RKRICCLMDC KKLSVDACTH AVQNERLPSR VVVQVLFFEQ VRANASSGSS TPDLPKAIRN
501: LTSASYASSR SATTNTENSE VTASAEELRA LKEELAALRL ANGGLNGDTK RHVDKAANGR MKSILSSKKI FTKIWSSKGR KQGENSGSDS SDSLEEAKYT
601: PSRKGRYSVS

Best Arabidopsis Sequence Match ( AT2G14820.1 )
(BLAST)

001: MKFMKIGSKL DSFKTDGNNV RYVENELASD ISVDVEGSRF CLHKFPLLSK CACLQKLLSS TDKNNIDDID ISGIPGGPTA FETCAKFCYG MTVTLSAYNV
101: VATRCAAEYL GMHETVEKGN LIYKIDVFLS SSLFRSWKDS IIVLQTTKPF LPLSEDLKLV SLCIDAIATK ACVDVSHVEW SYTYNKKKLA EENNGADSIK
201: ARDVPHDWWV EDLCELEIDY YKRVIMNIKT KCILGGEVIG EALKAYGYRR LSGFNKGVME QGDLVKHKTI IETLVWLLPA EKNSVSCGFL LKLLKAVTMV
301: NSGEVVKEQL VRRIGQQLEE ASMAELLIKS HQGSETLYDV DLVQKIVMEF MRRDKNSEIE VQDDEDGFEV QEVRKLPGIL SEASKLMVAK VIDSYLTEIA
401: KDPNLPASKF IDVAESVTSI PRPAHDALYR AIDMFLKEHP GITKGEKKRM CKLMDCRKLS VEACMHAVQN DRLPLRVVVQ VLFFEQVRAA ASSGSSTPDL
501: PRGMGRELRS CGTYGSSRSV PTVMEDEWEA VATEEEMRAL KSEIAALKLQ EESGRKSMDR AGVTAISKIR SLIMSKKIFG KKVQLQSKGG GEKNNGGGGG
601: GSDSSESLGS MNAAEETAKT ATPSRNLTRR VSVS

Arabidopsis Description

NPY2BTB/POZ domain-containing protein NPY2 [Source:UniProtKB/Swiss-Prot;Acc:O80970]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.